Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_20190 and PS417_20195 are separated by 34 nucleotidesPS417_20195 and PS417_20205 are separated by 543 nucleotidesPS417_20205 and PS417_20210 are separated by 103 nucleotidesPS417_20210 and PS417_20215 overlap by 89 nucleotides PS417_20190: PS417_20190 - nitrate reductase, at 4,386,189 to 4,387,700 _20190 PS417_20195: PS417_20195 - sodium:solute symporter, at 4,387,735 to 4,389,117 _20195 PS417_20205: PS417_20205 - LysR family transcriptional regulator, at 4,389,661 to 4,390,554 _20205 PS417_20210: PS417_20210 - membrane protein, at 4,390,658 to 4,391,866 _20210 PS417_20215: PS417_20215 - nitrate reductase, at 4,391,778 to 4,393,220 _20215
Group Condition PS417_20190 PS417_20195 PS417_20205 PS417_20210 PS417_20215
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 -0.3 -1.6 -0.1 -0.4
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 -0.4 -0.8 -0.0 -0.5
phage P. simiae OR Antrim MOI 0.1 -0.1 -0.1 -1.0 -0.2 -0.0
stress Doxycycline hyclate 0.001 mg/ml -0.4 -0.3 -0.3 +0.2 -0.3
phage JP1 MOI 10 -0.1 +0.1 -0.8 -0.4 +0.1
phage JP1 MOI 10 +0.1 +0.1 -1.2 -0.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.2 -1.0 +0.3 -0.0
rhizosphere rhizosphere sample 1; outgrowth in LB -0.2 -0.1 -0.7 +0.2 +0.1
phage P. simiae OR Antrim MOI 1 +0.1 +0.1 -0.8 -0.1 +0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 -0.1 -0.8 +0.8 -0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -0.3 -0.9 -0.0 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.1 -0.8 +0.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.2 -0.8 +0.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.1 -0.4 -0.2 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.2 -0.7 +0.4 +0.3
motility inner cut, LB soft agar motility assay +0.1 -0.3 +0.6 -0.3 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.0 +0.6 -0.5 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.5 -0.5 -0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +0.2 -0.3 +0.0 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 -0.3 +0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.1 -0.3 +0.4 +0.1
seeds Growth on radish seeds for 72 hours +0.7 +0.1 +0.2 -0.3 +0.1
root root sample 6; outgrowth in LB -0.1 +0.1 +0.3 +0.5 +0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.4 -0.0 +0.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.0 +0.0 +0.6 +0.3 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.2 -0.2 +0.4 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.4 +1.0 -0.5 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.1 +0.5 +0.3 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.2 +1.3 +0.0 +0.3
seeds Growth on radish seeds for 72 hours +0.3 +0.1 +1.9 -0.2 +0.4
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