Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_20085 and PS417_20090 are separated by 258 nucleotidesPS417_20090 and PS417_20095 overlap by 4 nucleotidesPS417_20095 and PS417_20100 overlap by 4 nucleotidesPS417_20100 and PS417_20105 are separated by 2 nucleotides PS417_20085: PS417_20085 - DNA replication initiation factor, at 4,356,863 to 4,357,567 _20085 PS417_20090: PS417_20090 - DegT/DnrJ/EryC1/StrS aminotransferase, at 4,357,826 to 4,358,950 _20090 PS417_20095: PS417_20095 - hypothetical protein, at 4,358,947 to 4,360,092 _20095 PS417_20100: PS417_20100 - hypothetical protein, at 4,360,089 to 4,360,880 _20100 PS417_20105: PS417_20105 - glycosyl transferase, at 4,360,883 to 4,365,220 _20105
Group Condition PS417_20085 PS417_20090 PS417_20095 PS417_20100 PS417_20105
motility outer cut, LB soft agar motility assay N.D. -5.9 -4.5 -3.5 -5.0
motility outer cut, LB soft agar motility assay N.D. -5.2 -3.8 -3.3 -4.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.6 -5.2 -1.2 -6.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -5.5 -1.4 -6.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.0 -5.3 -1.7 -5.8
motility inner cut, LB soft agar motility assay N.D. -4.3 -4.2 -2.8 -4.2
motility outer cut, LB soft agar motility assay N.D. -4.5 -3.5 -3.7 -3.6
motility outer cut, LB soft agar motility assay N.D. -4.3 -4.0 -3.2 -3.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.9 -4.0 -1.9 -6.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.3 -3.3 -1.6 -5.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.6 -2.9 -1.8 -5.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.7 -2.9 -1.3 -6.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.6 -2.6 -1.8 -5.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.9 -3.3 -1.4 -4.9
motility inner cut, LB soft agar motility assay N.D. -3.7 -3.0 -2.4 -3.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.7 -3.0 -1.5 -5.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.5 -2.4 -1.8 -5.7
motility inner cut, LB soft agar motility assay N.D. -3.4 -2.9 -2.7 -2.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.7 -3.3 -1.1 -4.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.9 -2.9 -1.9 -5.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.7 -2.5 -1.7 -5.8
motility inner cut, LB soft agar motility assay N.D. -2.8 -2.9 -2.6 -3.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.4 -2.3 -1.9 -5.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.5 -2.6 -1.2 -4.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.9 -2.6 -1.4 -4.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.0 -2.5 -1.3 -4.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.0 -2.1 -1.3 -3.8
phage JP1 MOI 10 N.D. +1.8 +1.8 +1.6 +2.3
stress LB_noSalt with Chloride 500 mM N.D. +2.0 +1.9 +1.4 +2.3
stress Choline chloride 300 mM N.D. +2.2 +2.3 +1.7 +2.8
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