Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_20010	PS417_20015	PS417_20020	PS417_20025	PS417_20030
nitrogen source	Adenosine (N)	-0.2	N.D.	-1.7	-2.4	-1.5
soil	soil sample 7; outgrowth in LB	-0.1	N.D.	-0.5	-4.2	-0.4
phage	P. simiae OR Antrim MOI 10	+0.0	N.D.	-0.1	-1.9	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	-0.1	-3.0	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	N.D.	-0.8	-3.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	N.D.	-0.6	-1.0	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	+0.0	-3.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	+0.3	-3.8	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	N.D.	-0.7	-0.8	-1.4
ecofab	LB in EcoFAB_3.5mL	+0.1	N.D.	-0.7	-1.1	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.6	-2.1	-0.1
phage	P. simiae Grant Run MOI 10	-0.5	N.D.	-0.5	-1.7	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	N.D.	-1.1	-1.2	-0.1
stress	LB_noSalt with Chloride 1100 mM	-0.3	N.D.	-0.4	-1.0	-1.1
phage	JP1 MOI 10	-0.3	N.D.	-0.3	-1.4	-0.6
seeds	Growth on radish seeds for 72 hours	+0.3	N.D.	-0.8	-2.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.3	-1.4	-0.9
phage	P. simiae Grant Run MOI 0.1	-0.2	N.D.	-0.4	-2.4	+0.4
carbon source	D,L-Lactate (C)	+0.0	N.D.	-0.0	-1.5	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	N.D.	-1.0	-0.7	-0.5
phage	Wcs_1	+0.1	N.D.	-0.7	-0.8	-1.0
carbon source	L-Citrulline (C)	-0.0	N.D.	-0.2	-1.0	-1.2
soil	soil sample 8; outgrowth in LB	+0.3	N.D.	-0.3	-1.5	-0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	N.D.	-0.8	-1.6	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	N.D.	-0.5	-0.5	-1.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	N.D.	-0.5	+0.4	-1.6
seeds	Growth on radish seeds for 72 hours	+0.2	N.D.	-0.3	+1.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	N.D.	-0.4	+2.5	-1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	N.D.	-0.0	+2.5	-0.8
nitrogen source	Glycine (N)	-0.2	N.D.	+3.1	+2.8	+2.7