Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19960 and PS417_19965 are separated by 114 nucleotidesPS417_19965 and PS417_19970 are separated by 46 nucleotidesPS417_19970 and PS417_19975 are separated by 61 nucleotidesPS417_19975 and PS417_19980 are separated by 457 nucleotides PS417_19960: PS417_19960 - membrane protein, at 4,334,019 to 4,334,402 _19960 PS417_19965: PS417_19965 - histidine kinase, at 4,334,517 to 4,337,987 _19965 PS417_19970: PS417_19970 - recombinase RmuC, at 4,338,034 to 4,339,512 _19970 PS417_19975: PS417_19975 - hypothetical protein, at 4,339,574 to 4,339,897 _19975 PS417_19980: PS417_19980 - hypothetical protein, at 4,340,355 to 4,340,660 _19980
Group Condition PS417_19960 PS417_19965 PS417_19970 PS417_19975 PS417_19980
carbon source Gly-Glu (C) +0.7 -2.7 -0.2 -0.2 N.D.
carbon source Gly-Glu (C) +0.4 -2.7 -0.1 +0.1 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.4 -0.3 -0.5 -0.9 N.D.
carbon source octanoate (C) +0.2 -2.3 +0.0 -0.0 N.D.
stress Gentamicin 0.008 mg/ml -0.4 +0.0 -0.5 -1.0 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.5 -0.0 -0.0 -1.3 N.D.
root root sample 6; outgrowth in LB -1.2 -0.6 +0.2 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.0 -0.6 +0.2 -1.4 N.D.
carbon source octanoate (C) +0.2 -2.3 +0.1 +0.4 N.D.
soil soil sample 5; outgrowth in LB -0.7 -0.7 -0.5 +0.2 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.2 -0.2 -0.7 -0.6 N.D.
carbon source L-Valine (C) +0.5 -1.8 -0.2 +0.6 N.D.
phage JP1 MOI 0.1 +0.7 -0.1 -1.0 -0.4 N.D.
carbon source L-Valine (C) +0.2 -1.9 +0.4 +0.7 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.7 -0.4 -0.8 N.D.
carbon source Ethanol (C) +0.4 -1.1 +0.0 +0.4 N.D.
carbon source acetate (C) +0.5 -1.0 -0.2 +0.6 N.D.
carbon source Fumarate (C) +0.2 -0.9 -0.1 +0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.2 -0.7 +1.1 N.D.
carbon source L-Leucine (C) +0.3 -0.8 +0.4 +0.3 N.D.
phage JP1 MOI 10 +0.7 -0.1 +0.5 -0.7 N.D.
phage JP1 MOI 1 +0.4 -0.3 -0.4 +1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +1.0 -0.0 +0.5 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.7 +0.6 -0.3 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 -0.4 -0.3 +1.3 N.D.
phage P. simiae OR Antrim MOI 1 +0.5 -0.2 -0.2 +1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +0.1 -0.2 +0.6 N.D.
seeds Growth on radish seeds for 72 hours -0.2 +0.1 -0.2 +2.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +1.0 +0.7 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.8 +0.1 +2.0 N.D.
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