Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19955	PS417_19960	PS417_19965	PS417_19970	PS417_19975
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.9	-0.6	+0.3	+0.3	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-3.4	-0.5	-0.0	-0.0	-1.3
soil	soil sample 3; outgrowth in LB	-4.3	+0.2	-0.5	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.7	-0.2	-0.1	-0.3	-0.4
soil	soil sample 5; outgrowth in LB	-1.9	-0.7	-0.7	-0.5	+0.2
carbon source	Gly-Glu (C)	-1.0	+0.7	-2.7	-0.2	-0.2
phage	P. simiae ORA MOI 0.1	-3.5	+0.3	-0.3	-0.1	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-3.5	-0.1	-0.2	+0.3	+0.2
soil	soil sample 7; outgrowth in LB	-2.6	+0.0	-0.6	-0.1	-0.0
carbon source	Gly-Glu (C)	-0.9	+0.4	-2.7	-0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.3	+0.1	-0.3	-0.6	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-1.6	+0.2	-0.2	-0.7	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.7	+0.1	+0.4	-0.2	-0.3
root	root sample 6; outgrowth in LB	-0.9	-1.2	-0.6	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.5	+0.1	+0.4	-0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.4	-0.1	+0.2	-0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.8	+0.2	+0.0	+0.0	+0.4
phage	JP1 MOI 0.1	-1.4	+0.7	-0.1	-1.0	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.2	+0.2	+0.7	-0.4	-0.8
phage	JP1 MOI 10	-1.9	+0.7	-0.1	+0.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	-0.2	-0.2	-0.7	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.2	+0.2	+0.3	-0.1	+0.2
carbon source	L-Valine (C)	-0.1	+0.5	-1.8	-0.2	+0.6
carbon source	octanoate (C)	+1.1	+0.2	-2.3	+0.1	+0.4
stress	Gentamicin 0.008 mg/ml	+1.4	-0.4	+0.0	-0.5	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.6	+1.0	-0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2	+0.3	-0.4	-0.3	+1.3
carbon source	L-Valine (C)	+0.8	+0.2	-1.9	+0.4	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.6	+0.0	+0.8	+0.1	+2.0
stress	Nalidixic 0.025 mg/ml	+2.3	+0.6	+0.0	-0.6	-0.3