Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19945	PS417_19950	PS417_19955	PS417_19960	PS417_19965
soil	soil sample 3; outgrowth in LB	-1.7	-0.2	-4.3	+0.2	-0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.3	-0.4	-3.5	-0.1	-0.2
soil	soil sample 5; outgrowth in LB	-0.6	-0.5	-1.9	-0.7	-0.7
carbon source	Gly-Glu (C)	-0.9	-0.1	-1.0	+0.7	-2.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	+0.5	-3.4	-0.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.3	-4.9	-0.6	+0.3
carbon source	Gly-Glu (C)	-0.7	-0.0	-0.9	+0.4	-2.7
root	root sample 6; outgrowth in LB	-0.5	-0.5	-0.9	-1.2	-0.6
phage	P. simiae ORA MOI 0.1	+0.3	-0.5	-3.5	+0.3	-0.3
soil	soil sample 7; outgrowth in LB	-0.6	+0.1	-2.6	+0.0	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.1	-0.0	-0.6	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.1	-2.8	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.1	-2.7	-0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	+0.7	-2.0	+0.0	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.9	-0.2	-1.6	+0.6	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.0	-2.7	+0.1	+0.4
phage	Wcs_1	+0.8	-0.1	-2.2	-0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.3	-2.5	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+1.0	-2.3	+0.1	-0.3
solid stress	80% Methanol 0.5 mM; solid stress	+0.8	-0.4	-1.9	-0.1	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.2	-0.3	-1.7	-0.1	+0.3
carbon source	L-Valine (C)	+0.1	+0.1	+0.8	+0.2	-1.9
carbon source	octanoate (C)	+1.5	-0.1	+0.5	+0.2	-2.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.5	-1.1	-0.6	+1.0
carbon source	octanoate (C)	+1.2	-0.0	+1.1	+0.2	-2.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.9	+0.2	-1.1	-0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+2.7	+0.2	-0.4	+0.0	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.8	+0.2	-1.2	+0.2	+0.7
stress	Doxycycline hyclate 0.001 mg/ml	+3.2	-0.1	+0.7	-0.2	+0.3
stress	Nalidixic 0.025 mg/ml	+2.7	-0.0	+2.3	+0.6	+0.0