Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19920 and PS417_19925 are separated by 99 nucleotidesPS417_19925 and PS417_19930 are separated by 132 nucleotidesPS417_19930 and PS417_19935 are separated by 41 nucleotidesPS417_19935 and PS417_19940 are separated by 84 nucleotides PS417_19920: PS417_19920 - AraC family transcriptional regulator, at 4,325,650 to 4,326,399 _19920 PS417_19925: PS417_19925 - membrane protein, at 4,326,499 to 4,327,383 _19925 PS417_19930: PS417_19930 - DNA methyltransferase, at 4,327,516 to 4,327,797 _19930 PS417_19935: PS417_19935 - hypothetical protein, at 4,327,839 to 4,328,126 _19935 PS417_19940: PS417_19940 - membrane protein, at 4,328,211 to 4,330,400 _19940
Group Condition PS417_19920 PS417_19925 PS417_19930 PS417_19935 PS417_19940
stress R2A with Fusaric 120 ug/mL +0.2 N.D. -0.5 -0.2 -3.5
stress R2A with Fusaric 120 ug/mL -0.1 N.D. -0.4 -0.3 -3.1
stress R2A with Fusaric 120 ug/mL -0.0 N.D. -0.2 -0.5 -2.8
stress R2A with Fusaric 120 ug/mL +0.2 N.D. -0.1 +0.2 -3.6
stress R2A with Fusaric 120 ug/mL +0.2 N.D. +0.0 -0.0 -3.3
stress R2A with Fusaric 120 ug/mL -0.1 N.D. +0.1 +0.0 -3.0
solid stress Fraxetin 3 mM; solid stress +0.1 N.D. -0.4 -0.2 -2.0
solid stress Fraxetin 3 mM; solid stress -0.1 N.D. -0.0 -0.4 -1.8
solid stress Fraxetin 2 mM; solid stress -0.0 N.D. -0.0 -0.3 -1.8
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. -0.6 -1.0 -0.3
solid stress Fraxetin 2 mM; solid stress -0.1 N.D. -0.3 -0.1 -1.3
solid stress Fraxetin 2 mM; solid stress -0.1 N.D. +0.0 +0.2 -1.9
stress methylglyoxal 0.032 vol% -0.4 N.D. -0.6 -0.3 -0.5
soil soil sample 7; outgrowth in LB -0.2 N.D. -0.1 -1.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. +0.1 -1.4 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 N.D. -0.7 -0.7 -0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 N.D. +0.1 -1.1 +0.3
solid stress Fraxetin 3 mM; solid stress -0.0 N.D. +0.3 -0.5 -0.8
phage JP1 MOI 10 -0.0 N.D. -1.4 +0.5 +0.1
root root sample 6; outgrowth in LB -0.4 N.D. -0.4 -0.4 +0.4
nitrogen source Inosine (N) +0.1 N.D. +0.7 -0.7 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. -0.8 +1.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. +0.7 -0.6 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. -0.6 +0.4 +0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -0.6 +1.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 N.D. -0.4 +1.3 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. +0.1 +1.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 N.D. +0.8 +0.5 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 N.D. +0.3 +1.3 -0.5
stress 1-ethyl-3-methylimidazolium acetate 35 mM +0.2 N.D. +0.4 -0.1 +1.8
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