Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19895	PS417_19900	PS417_19905	PS417_19910	PS417_19915
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.8	-0.9	N.D.	-0.6	-0.2
solid stress	Fraxetin 3 mM; solid stress	-0.8	-0.5	N.D.	-0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.7	N.D.	-0.6	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.2	N.D.	-0.6	-0.5
soil	soil sample 6; outgrowth in LB	-0.1	-0.6	N.D.	-0.7	+0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	-0.2	N.D.	-0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.3	N.D.	-0.9	-0.0
stress	Gentamicin 0.008 mg/ml	-0.5	-0.5	N.D.	+0.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.4	N.D.	+0.3	+0.1
phage	JP1 MOI 1	+0.0	+0.5	N.D.	-0.3	-0.5
phage	P. simiae Grant Run MOI 0.1	+0.5	+0.5	N.D.	-0.8	-0.1
soil	soil sample 2; outgrowth in LB	-0.2	-0.5	N.D.	+0.4	+0.4
seeds	Growth on radish seeds for 72 hours	+0.4	+0.2	N.D.	-0.9	+0.3
seeds	Growth on radish seeds for 72 hours	+0.2	+0.4	N.D.	-0.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.6	N.D.	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-0.3	N.D.	+0.5	-0.3
phage	P. simiae ORA MOI 0.1	+0.2	+0.3	N.D.	-0.5	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	-0.5	N.D.	-0.1	+0.3
stress	Thallium(I) acetate 0.0625 mg/ml	+0.6	+0.2	N.D.	-0.5	+0.1
nophagecontrol	Only library	+0.1	+0.9	N.D.	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.3	N.D.	+0.9	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	+0.7	N.D.	+0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.6	N.D.	-0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.5	N.D.	+0.8	-0.0
phage	P. simiae OR1 MOI 0.1	+0.2	+0.8	N.D.	-0.1	+0.0
stress	1-ethyl-3-methylimidazolium acetate 35 mM	+0.4	+0.1	N.D.	+0.7	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.2	N.D.	+0.7	+0.1
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.8	+1.0	N.D.	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	+0.3	N.D.	+0.6	+0.1
phage	P. simiae Grant Run MOI 10	+0.6	+0.4	N.D.	+1.0	-0.0