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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3884 and GFF3885 are separated by 10 nucleotides
GFF3885 and GFF3886 are separated by 177 nucleotides
GFF3886 and GFF3887 are separated by 376 nucleotides
GFF3887 and GFF3888 overlap by 1 nucleotides
GFF3884 - Colanic acid biosynthesis glycosyl transferase WcaL, at 162,191 to 163,411
GFF3884
GFF3885 - Colanic acid biosynthesis protein wcaM, at 163,422 to 164,825
GFF3885
GFF3886 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 165,003 to 165,896
GFF3886
GFF3887 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 166,273 to 167,358
GFF3887
GFF3888 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 167,358 to 168,257
GFF3888
Group
Condition
GFF3884
GFF3885
GFF3886
GFF3887
GFF3888
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
+0.8
+0.6
-6.9
-6.9
-5.0
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
+0.6
+0.3
-4.8
-6.6
-6.8
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
+1.2
+0.6
-7.3
-6.7
-4.8
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
+1.3
+0.5
-6.2
-5.6
-4.7
phage
LB_plus_SM_buffer with 6H2_phage 0.5 MOI
-0.0
+0.1
-0.9
-4.1
-5.6
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
+2.4
+1.0
-5.7
-4.5
-3.6
micoeukaryotes
Dictyostellum sp.mixed culture-1
-0.3
-0.1
-0.2
-3.1
-6.8
micoeukaryotes
Dictyostellum sp.mixed culture-2
-0.0
-0.2
-0.2
-3.6
-6.5
lb_plus_sm_buffer
LB_plus_SM_buffer
+0.2
-0.2
-0.7
-3.5
-6.0
micoeukaryotes
C.elegans, mixed culture-2
-0.0
-0.0
-0.1
-3.1
-6.4
micoeukaryotes
Acanthamoeba sp., muxed culture-2
-0.2
-0.2
-0.2
-2.9
-6.2
micoeukaryotes
C.elegans, mixed culture-1
-0.0
-0.1
-0.2
-3.0
-5.2
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
+0.8
+0.5
-4.3
-4.1
-0.8
lb_plus_sm_buffer
LB_plus_SM_buffer
-0.2
+0.1
-0.4
-4.2
-2.9
micoeukaryotes
Acanthamoeba sp., muxed culture-1
-0.1
-0.1
-0.4
-3.3
-3.3
phage
Ffm_phage 10 MOI; agar plate assay
-0.2
-0.4
+0.4
-0.0
-6.5
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
+0.2
+0.2
-1.3
-2.6
-2.2
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+1.1
+0.5
-2.3
-2.4
-2.5
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+0.7
+0.4
-1.8
-1.9
-1.8
phage
LB_plus_SM_buffer with EIP16_phage 0.875 MOI
+0.3
+0.5
-2.4
-2.7
+0.2
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+1.2
+0.4
-2.4
-1.4
-1.3
phage
6F2_phage 15 MOI
-0.4
-0.2
-0.1
+1.3
+5.0
phage
6F2_phage 15 MOI
+0.1
-0.5
-0.2
+1.3
+5.2
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
+0.3
+0.2
-0.3
+1.5
+4.9
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
+0.3
+0.1
-0.2
+1.5
+5.0
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
+0.5
+0.3
-0.2
+1.5
+5.2
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
+0.1
-0.0
+0.1
+2.6
+8.1
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
+0.0
+0.4
+0.2
+3.0
+8.9
phage
LB_plus_SM_buffer with P22_phage 15 MOI
+0.1
+0.3
-0.1
+4.4
+8.7
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
-0.7
-0.2
+0.7
+5.0
+9.7
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