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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3882 and GFF3883 are separated by 21 nucleotides
GFF3883 and GFF3884 overlap by 4 nucleotides
GFF3884 and GFF3885 are separated by 10 nucleotides
GFF3885 and GFF3886 are separated by 177 nucleotides
GFF3882 - Lipopolysaccharide biosynthesis protein WzxC, at 159,381 to 160,892
GFF3882
GFF3883 - Colanic acid biosysnthesis protein WcaK, at 160,914 to 162,194
GFF3883
GFF3884 - Colanic acid biosynthesis glycosyl transferase WcaL, at 162,191 to 163,411
GFF3884
GFF3885 - Colanic acid biosynthesis protein wcaM, at 163,422 to 164,825
GFF3885
GFF3886 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 165,003 to 165,896
GFF3886
Group
Condition
GFF3882
GFF3883
GFF3884
GFF3885
GFF3886
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
-0.2
+0.9
+0.8
+0.6
-6.9
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
-0.3
+1.2
+1.2
+0.6
-7.3
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
-0.3
+1.3
+1.3
+0.5
-6.2
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.0075 MOI
-0.1
+0.6
+0.6
+0.3
-4.8
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
-0.3
+0.6
+0.8
+0.5
-4.3
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.5
-0.5
-0.6
-0.4
-0.5
phage
LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
+0.2
+0.3
+0.3
+0.2
-2.5
phage
LB_plus_SM_buffer with EIP16_phage 0.875 MOI
-0.3
+0.4
+0.3
+0.5
-2.4
phage
Br60_phage 15 MOI
-0.2
-0.3
-0.2
-0.2
-0.3
phage
LB_plus_SM_buffer with Br60_phage 0.000005 MOI
-0.3
+0.3
+0.1
-0.0
-1.2
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
-0.5
+1.9
+2.4
+1.0
-5.7
lb_plus_sm_buffer
LB_plus_SM_buffer
-0.1
-0.1
+0.2
-0.2
-0.7
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.5
+0.5
+1.2
+0.4
-2.4
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
-0.6
+0.3
+0.9
+0.2
-1.6
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
-0.5
+0.4
+0.7
+0.4
-1.8
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
+0.0
+0.2
+0.2
+0.2
-1.3
phage
LB_plus_SM_buffer with Br60_phage 0.00005 MOI
-0.1
+0.3
+0.1
+0.1
-1.1
phage
6F2_phage 15 MOI
+0.2
-0.3
+0.1
-0.5
-0.2
phage
6H2_phage 10 MOI; agar plate assay
-0.1
-0.1
-0.4
-0.3
+0.3
phage
phi19h1_phage 15 MOI
+0.2
-0.1
-0.3
+0.2
-0.4
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
+0.2
-0.6
-0.7
-0.2
+0.7
phage
LB_plus_SM_buffer with P22_phage 15 MOI
-0.3
-0.4
+0.1
+0.3
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
-0.3
+0.7
+1.1
+0.5
-2.3
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.1
+0.0
+0.5
+0.1
-0.8
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
-0.4
+0.3
+0.3
-0.3
-0.1
lb_plus_sm_buffer
LB_plus_SM_buffer
-0.1
+0.2
+0.3
-0.2
-0.6
phage
Ffm_phage 10 MOI; agar plate assay
+0.1
-0.1
-0.2
-0.4
+0.4
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.3
+0.5
+0.5
+0.1
-1.0
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.3
-0.3
+0.0
+0.4
+0.2
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.1
+0.3
+0.5
+0.1
-0.4
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