Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3875 and GFF3876 are separated by 17 nucleotidesGFF3876 and GFF3877 overlap by 1 nucleotidesGFF3877 and GFF3878 overlap by 4 nucleotidesGFF3878 and GFF3879 are separated by 151 nucleotides GFF3875 - beta-N-acetylglucosaminidase (EC 3.2.1.52), at 72,237 to 73,319 GFF3875 GFF3876 - UTP pyrophosphatase (EC 3.6.1.9), at 73,337 to 73,852 GFF3876 GFF3877 - Uncharacterized chaperone protein YegD, at 73,852 to 75,132 GFF3877 GFF3878 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 75,129 to 76,676 GFF3878 GFF3879 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 76,828 to 77,472 GFF3879
Group Condition GFF3875 GFF3876 GFF3877 GFF3878 GFF3879
phage phage_bap4 -0.3 -0.1 -0.3 N.D. -0.8
phage phage_bap4 -0.5 -0.2 -0.2 N.D. -0.2
phage phage_bap4 -0.5 -0.1 -0.4 N.D. -0.1
complex community Community=guar; Passage=4 -0.2 +0.1 +0.0 N.D. -1.0
phage phage_bap4 -0.2 -0.1 -0.4 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 -0.0 -0.1 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.0 +0.0 N.D. -0.5
complex community Community=guar; Passage=4 +0.4 +0.2 +0.2 N.D. -1.1
vitamin M9 with Supernatant from Cyptococcus -0.3 +0.0 -0.1 N.D. +0.3
phage phage_bap4 -0.2 -0.1 -0.1 N.D. +0.3
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.1 -0.0 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 +0.1 +0.2 N.D. -0.0
complex community Community=Locust bean gum; Passage=4 +0.3 -0.0 +0.1 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 +0.1 +0.1 N.D. -0.3
phage phage_bap4 -0.4 +0.0 +0.1 N.D. +0.4
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.3 +0.1 +0.1 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 +0.1 +0.1 N.D. +0.2
complex community Community=arabino-guar; Passage=4 +0.2 +0.1 -0.1 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 +0.1 +0.0 N.D. +0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 +0.1 +0.0 N.D. +0.4
complex community Community=Locust bean gum; Passage=4 +0.3 +0.4 +0.1 N.D. -0.4
phage phage_bap4 +0.1 +0.1 -0.0 N.D. +0.3
complex community Community=arabino-guar; Passage=4 -0.0 +0.4 +0.1 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus +0.2 +0.1 +0.1 N.D. +0.3
complex community Community=Locust bean gum; Passage=4 +0.5 -0.4 +0.1 N.D. +0.5
complex community Community=Kojac gum; Passage=4 +0.9 +0.1 +0.4 N.D. -0.5
complex community Community=Locust bean gum; Passage=4 +1.0 -0.2 -0.2 N.D. +0.6
complex community Community=guar; Passage=4 +0.3 +0.0 +0.1 N.D. +0.8
complex community Community=arabino-guar; Passage=4 +0.5 +0.1 +0.2 N.D. +0.4
complex community Community=arabino-guar; Passage=4 +0.4 +0.4 +0.2 N.D. +0.4
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