Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3871 and GFF3872 are separated by 136 nucleotidesGFF3872 and GFF3873 overlap by 4 nucleotidesGFF3873 and GFF3874 are separated by 13 nucleotidesGFF3874 and GFF3875 overlap by 4 nucleotides GFF3871 - GTP-binding protein Era, at 69,204 to 70,169 GFF3871 GFF3872 - DNA recombination and repair protein RecO, at 70,306 to 71,076 GFF3872 GFF3873 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 71,073 to 71,834 GFF3873 GFF3874 - Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7), at 71,848 to 72,240 GFF3874 GFF3875 - beta-N-acetylglucosaminidase (EC 3.2.1.52), at 72,237 to 73,319 GFF3875
Group Condition GFF3871 GFF3872 GFF3873 GFF3874 GFF3875
complex community Community=guar; Passage=4 N.D. -1.0 N.D. -2.6 +0.3
complex community Community=arabino-guar; Passage=4 N.D. -0.1 N.D. -3.0 -0.0
complex community Community=arabino-guar; Passage=4 N.D. -0.3 N.D. -1.9 +0.2
phage phage_bap4 N.D. -0.2 N.D. -0.8 -0.5
phage phage_bap4 N.D. -0.2 N.D. -0.8 -0.5
phage phage_bap4 N.D. -0.4 N.D. -0.5 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.1 N.D. -0.7 -0.1
vitamin M9 with Supernatant from Cyptococcus N.D. -0.1 N.D. -0.8 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.2 N.D. -0.4 -0.1
vitamin M9 with Supernatant from Cyptococcus N.D. +0.0 N.D. -0.4 -0.3
phage phage_bap4 N.D. -0.0 N.D. -0.3 -0.4
complex community Community=guar; Passage=4 N.D. -0.4 N.D. -0.2 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.1 N.D. -0.7 +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.2 N.D. -0.5 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.4 N.D. +0.5 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. -0.2 N.D. +0.3 -0.3
complex community Community=Locust bean gum; Passage=4 N.D. +0.0 N.D. -0.4 +0.3
complex community Community=Locust bean gum; Passage=4 N.D. -0.5 N.D. -0.6 +1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.1 N.D. +0.4 -0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. -0.1 N.D. +0.4 -0.3
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 N.D. -0.3 +0.5
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.1 N.D. +0.4 -0.2
complex community Community=arabino-guar; Passage=4 N.D. -0.5 N.D. +0.3 +0.4
complex community Community=arabino-guar; Passage=4 N.D. -0.3 N.D. +0.0 +0.5
vitamin M9 with Supernatant from Cyptococcus N.D. -0.3 N.D. +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.1 N.D. +0.6 -0.2
complex community Community=Kojac gum; Passage=4 N.D. +0.1 N.D. -0.6 +0.9
complex community Community=Locust bean gum; Passage=4 N.D. +0.3 N.D. -0.1 +0.3
vitamin M9 with Supernatant from Cyptococcus N.D. -0.0 N.D. +0.5 +0.2
complex community Community=guar; Passage=4 N.D. -0.3 N.D. +1.2 +0.4
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