Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3865 and GFF3866 are separated by 109 nucleotidesGFF3866 and GFF3867 are separated by 522 nucleotidesGFF3867 and GFF3868 are separated by 7 nucleotidesGFF3868 and GFF3869 are separated by 34 nucleotides GFF3865 - Sigma factor RpoE negative regulatory protein RseB precursor, at 62,250 to 63,191 GFF3865 GFF3866 - HtrA protease/chaperone protein, at 63,301 to 64,782 GFF3866 GFF3867 - Translation elongation factor LepA, at 65,305 to 67,116 GFF3867 GFF3868 - Signal peptidase I (EC 3.4.21.89), at 67,124 to 68,089 GFF3868 GFF3869 - Putative transmembrane protein, at 68,124 to 68,492 GFF3869
Group Condition GFF3865 GFF3866 GFF3867 GFF3868 GFF3869
complex community Community=arabino-guar; Passage=4 -1.2 -0.0 -1.8 N.D. -1.5
complex community Community=arabino-guar; Passage=4 -2.5 -0.0 -1.5 N.D. -0.4
complex community Community=guar; Passage=4 -1.4 -0.3 -1.4 N.D. -0.3
complex community Community=arabino-guar; Passage=4 -0.7 -0.1 -1.3 N.D. -0.8
complex community Community=guar; Passage=4 -0.5 -0.1 -1.0 N.D. -0.6
complex community Community=Kojac gum; Passage=4 -1.1 -0.2 -0.8 N.D. +0.1
complex community Community=guar; Passage=4 -0.1 -0.0 -1.4 N.D. -0.4
complex community Community=arabino-guar; Passage=4 -0.0 -0.1 -1.4 N.D. -0.4
complex community Community=guar; Passage=4 -0.9 +0.2 -0.9 N.D. -0.1
phage phage_bap4 -0.8 -0.0 -0.2 N.D. -0.6
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.8 -0.2 -0.1 N.D. -0.2
complex community Community=Locust bean gum; Passage=4 -0.3 +0.0 -1.1 N.D. +0.2
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.8 -0.2 -0.2 N.D. +0.1
no phage control no phage control -0.4 -0.1 -0.3 N.D. -0.2
no phage control no phage control -0.3 -0.0 -0.3 N.D. -0.3
complex community Community=Locust bean gum; Passage=4 -0.2 -0.0 -0.9 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 -0.2 +0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 -0.3 +0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.8 -0.2 +0.2 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.6 -0.2 +0.3 N.D. -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.5 -0.1 -0.2 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.6 -0.1 +0.1 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.5 -0.1 -0.1 N.D. +0.5
phage phage_bap4 -0.5 -0.1 -0.2 N.D. +0.6
phage phage_bap4 -0.5 -0.0 -0.1 N.D. +0.7
phage phage_bap4 -0.2 -0.1 -0.2 N.D. +0.7
phage phage_bap4 -0.4 -0.1 -0.1 N.D. +0.8
complex community Community=Locust bean gum; Passage=4 +0.0 +0.3 -0.8 N.D. +0.9
complex community Community=Locust bean gum; Passage=4 +0.4 +0.1 -0.6 N.D. +0.8
phage phage_bap4 +0.4 +0.0 +0.3 N.D. +0.5
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