Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3861 and GFF3862 are separated by 13 nucleotidesGFF3862 and GFF3863 are separated by 10 nucleotidesGFF3863 and GFF3864 are separated by 17 nucleotidesGFF3864 and GFF3865 are separated by 174 nucleotides GFF3861 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 58,952 to 60,196 GFF3861 GFF3862 - hypothetical protein, at 60,210 to 60,692 GFF3862 GFF3863 - RNA polymerase sigma factor RpoE, at 60,703 to 61,380 GFF3863 GFF3864 - Sigma factor RpoE negative regulatory protein RseA, at 61,398 to 62,075 GFF3864 GFF3865 - Sigma factor RpoE negative regulatory protein RseB precursor, at 62,250 to 63,191 GFF3865
Group Condition GFF3861 GFF3862 GFF3863 GFF3864 GFF3865
complex community Community=arabino-guar; Passage=4 N.D. -0.1 +0.1 -0.6 -2.5
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 -0.2 -2.4 -0.2
complex community Community=Kojac gum; Passage=4 N.D. +0.2 -0.1 -1.5 -1.1
complex community Community=arabino-guar; Passage=4 N.D. +0.0 -0.4 -1.3 -0.0
complex community Community=arabino-guar; Passage=4 N.D. +0.2 -0.0 -0.6 -1.2
complex community Community=guar; Passage=4 N.D. +0.2 +0.1 -0.4 -1.4
complex community Community=arabino-guar; Passage=4 N.D. -0.0 +0.2 -1.0 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.1 -0.2 -0.3 -0.8
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.0 -0.1 -0.6 -0.8
phage phage_bap4 N.D. -0.2 -0.4 -0.2 -0.5
phage phage_bap4 N.D. +0.0 +0.1 -0.5 -0.8
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.0 -0.2 -0.5 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.0 -0.1 -0.8 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. -0.0 -0.1 -0.6 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.1 -0.0 -0.6 -0.6
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.0 -0.1 -0.4 -0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.0 -0.2 -0.4 -0.5
phage phage_bap4 N.D. -0.2 -0.2 -0.6 -0.2
phage phage_bap4 N.D. +0.0 +0.0 -0.8 -0.3
complex community Community=Locust bean gum; Passage=4 N.D. +0.0 -0.0 -0.8 -0.3
phage phage_bap4 N.D. -0.1 -0.0 -0.6 -0.3
complex community Community=guar; Passage=4 N.D. +0.3 +0.1 -1.2 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.1 +0.0 -0.3 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.0 -0.1 -0.8 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.1 -0.1 -0.7 -0.2
no phage control no phage control N.D. -0.0 +0.1 -0.5 -0.4
complex community Community=guar; Passage=4 N.D. +0.1 +0.2 -0.1 -0.9
no phage control no phage control N.D. +0.1 +0.1 -0.6 -0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL N.D. +0.1 -0.2 -0.6 +0.3
complex community Community=Locust bean gum; Passage=4 N.D. +0.2 -0.2 -0.5 +0.4
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