Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3844 and GFF3845 are separated by 47 nucleotidesGFF3845 and GFF3846 are separated by 6 nucleotidesGFF3846 and GFF3847 are separated by 272 nucleotidesGFF3847 and GFF3848 overlap by 8 nucleotides GFF3844 - Transcriptional regulator, LysR family, at 43,271 to 44,137 GFF3844 GFF3845 - Ribonuclease E (EC 3.1.26.12), at 44,185 to 47,391 GFF3845 GFF3846 - hypothetical protein, at 47,398 to 47,661 GFF3846 GFF3847 - LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24), at 47,934 to 49,046 GFF3847 GFF3848 - Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C, at 49,039 to 49,710 GFF3848
Group Condition GFF3844 GFF3845 GFF3846 GFF3847 GFF3848
complex community Community=arabino-guar; Passage=4 +0.1 -1.9 N.D. -1.0 -0.5
complex community Community=Kojac gum; Passage=4 -0.0 -1.3 N.D. -0.6 -0.5
complex community Community=arabino-guar; Passage=4 -0.4 -1.5 N.D. -0.1 -0.2
complex community Community=Locust bean gum; Passage=4 -0.1 -0.9 N.D. -0.5 -0.7
complex community Community=guar; Passage=4 -0.5 -1.4 N.D. -0.5 +0.2
complex community Community=Locust bean gum; Passage=4 +0.4 -0.9 N.D. -0.5 -0.7
complex community Community=Locust bean gum; Passage=4 +0.6 -1.0 N.D. -0.3 -1.0
complex community Community=guar; Passage=4 +0.2 -1.8 N.D. -0.3 +0.2
phage phage_bap4 -0.1 -1.0 N.D. -0.4 -0.0
complex community Community=arabino-guar; Passage=4 +0.2 -1.6 N.D. -0.1 +0.0
phage phage_bap4 -0.4 -0.8 N.D. -0.2 -0.0
complex community Community=guar; Passage=4 +0.6 -1.0 N.D. -0.7 -0.4
phage phage_bap4 -0.0 -0.7 N.D. -0.4 -0.1
no phage control no phage control -0.0 -0.7 N.D. -0.3 -0.1
no phage control no phage control -0.1 -0.6 N.D. -0.4 -0.1
phage phage_bap4 -0.8 +0.2 N.D. -0.2 -0.2
phage phage_bap4 -0.1 -0.7 N.D. -0.2 +0.1
phage phage_bap4 -0.1 -0.5 N.D. -0.3 -0.1
complex community Community=Locust bean gum; Passage=4 +0.8 -0.4 N.D. -0.6 -0.6
complex community Community=guar; Passage=4 +0.8 -1.2 N.D. -0.3 -0.2
complex community Community=arabino-guar; Passage=4 +0.7 -0.9 N.D. -0.4 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.6 N.D. +0.0 -0.2
phage phage_bap4 +0.4 -0.5 N.D. -0.4 -0.2
no phage control no phage control +0.1 -0.6 N.D. -0.3 +0.1
no phage control no phage control +0.1 -0.5 N.D. -0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.7 N.D. +0.1 +0.0
phage phage_bap4 -0.4 +0.5 N.D. -0.4 -0.2
phage phage_bap4 +0.2 -0.4 N.D. -0.3 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.6 N.D. +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 +0.4 N.D. +0.1 -0.2
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