Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3842 and GFF3843 are separated by 6 nucleotidesGFF3843 and GFF3844 are separated by 108 nucleotidesGFF3844 and GFF3845 are separated by 47 nucleotidesGFF3845 and GFF3846 are separated by 6 nucleotides GFF3842 - Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 40,304 to 41,587 GFF3842 GFF3843 - Uncharacterized MFS-type transporter, at 41,594 to 43,162 GFF3843 GFF3844 - Transcriptional regulator, LysR family, at 43,271 to 44,137 GFF3844 GFF3845 - Ribonuclease E (EC 3.1.26.12), at 44,185 to 47,391 GFF3845 GFF3846 - hypothetical protein, at 47,398 to 47,661 GFF3846
Group Condition GFF3842 GFF3843 GFF3844 GFF3845 GFF3846
complex community Community=arabino-guar; Passage=4 -3.9 +0.1 +0.1 -1.9 N.D.
complex community Community=guar; Passage=4 -3.3 +0.1 +0.8 -1.2 N.D.
complex community Community=arabino-guar; Passage=4 -1.8 +0.2 -0.4 -1.5 N.D.
complex community Community=guar; Passage=4 -1.6 +0.2 -0.5 -1.4 N.D.
complex community Community=arabino-guar; Passage=4 -1.9 +0.3 +0.2 -1.6 N.D.
complex community Community=Kojac gum; Passage=4 -1.1 +0.1 -0.0 -1.3 N.D.
complex community Community=guar; Passage=4 -0.8 +0.1 +0.2 -1.8 N.D.
complex community Community=Locust bean gum; Passage=4 -1.4 +0.3 +0.4 -0.9 N.D.
vitamin M9 with Supernatant from Cyptococcus -0.7 -0.0 -0.1 -0.4 N.D.
vitamin M9 with Supernatant from Cyptococcus -0.6 -0.1 +0.1 -0.6 N.D.
complex community Community=Locust bean gum; Passage=4 -0.6 -0.1 +0.6 -1.0 N.D.
complex community Community=Locust bean gum; Passage=4 -0.3 +0.1 -0.1 -0.9 N.D.
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.8 +0.0 +0.1 -0.4 N.D.
complex community Community=arabino-guar; Passage=4 -0.9 +0.0 +0.7 -0.9 N.D.
phage phage_bap4 -0.1 +0.1 -0.1 -1.0 N.D.
phage phage_bap4 -0.3 +0.1 -0.1 -0.7 N.D.
vitamin M9 with Supernatant from Cyptococcus -0.6 +0.1 +0.1 -0.3 N.D.
phage phage_bap4 -0.1 -0.1 -0.8 +0.2 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 +0.2 -0.0 -0.4 N.D.
vitamin M9 with Supernatant from Cyptococcus -0.6 +0.1 +0.2 -0.3 N.D.
complex community Community=Locust bean gum; Passage=4 -1.1 +0.1 +0.8 -0.4 N.D.
phage phage_bap4 +0.5 +0.2 -0.4 -0.8 N.D.
phage phage_bap4 +0.3 +0.0 -0.0 -0.7 N.D.
phage phage_bap4 -0.3 -0.1 -0.4 +0.5 N.D.
complex community Community=guar; Passage=4 +0.1 -0.1 +0.6 -1.0 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 +0.1 -0.1 -0.7 N.D.
no phage control no phage control +0.2 +0.1 +0.1 -0.6 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.5 +0.1 +0.1 -0.6 N.D.
phage phage_bap4 +0.3 +0.1 +0.4 -0.5 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 +0.1 -0.2 +0.4 N.D.
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