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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3842 and GFF3843 are separated by 11 nucleotides
GFF3843 and GFF3844 are separated by 52 nucleotides
GFF3844 and GFF3845 are separated by 168 nucleotides
GFF3845 and GFF3846 overlap by 11 nucleotides
GFF3842 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,881,260 to 3,881,952
GFF3842
GFF3843 - ABC transporter, permease protein, at 3,881,964 to 3,883,280
GFF3843
GFF3844 - hypothetical protein, at 3,883,333 to 3,883,533
GFF3844
GFF3845 - Two-component transcriptional response regulator, LuxR family, at 3,883,702 to 3,885,126
GFF3845
GFF3846 - hypothetical protein, at 3,885,116 to 3,886,456
GFF3846
Group
Condition
GFF3842
GFF3843
GFF3844
GFF3845
GFF3846
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.3
-0.7
-0.4
-0.6
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
-0.4
-0.2
-0.2
-0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
-0.3
-0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.0
-0.4
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.1
-0.1
-0.0
-0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
-0.1
+0.1
-0.3
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.1
-0.4
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.0
-0.3
-0.0
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.2
-0.3
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
+0.1
-0.2
-0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.1
-0.2
+0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
-0.1
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.0
-0.2
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.1
-0.2
-0.3
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.0
-0.1
+0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.2
-0.2
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.1
+0.1
-0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.1
-0.2
+0.1
+0.0
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