Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_01945 and PS417_01950 are separated by 181 nucleotidesPS417_01950 and PS417_01955 are separated by 191 nucleotidesPS417_01955 and PS417_01960 are separated by 218 nucleotidesPS417_01960 and PS417_01965 overlap by 4 nucleotides PS417_01945: PS417_01945 - nuclease, at 431,076 to 431,870 _01945 PS417_01950: PS417_01950 - malate dehydrogenase, at 432,052 to 433,320 _01950 PS417_01955: PS417_01955 - peptidase, at 433,512 to 435,974 _01955 PS417_01960: PS417_01960 - pilus assembly protein, at 436,193 to 436,846 _01960 PS417_01965: PS417_01965 - fimbriae biosynthesis protein, at 436,843 to 437,397 _01965
Group Condition PS417_01945 PS417_01950 PS417_01955 PS417_01960 PS417_01965
solid stress Fraxetin 3 mM; solid stress +0.0 -2.3 -5.7 +0.2 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 -2.6 -5.5 +0.3 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +0.2 -6.7 -0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.1 -6.0 -0.2 -1.0
solid stress Fraxetin 3 mM; solid stress -0.3 -1.6 -4.7 -0.2 +0.2
solid stress Fraxetin 3 mM; solid stress +0.3 -2.4 -5.1 +0.3 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.2 -5.7 +0.8 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -1.9 -4.6 +0.4 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.3 -0.3 -6.8 -0.6 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.2 -5.6 -0.6 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.1 -6.4 -0.4 +1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.1 -5.3 +0.5 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.1 -6.7 -0.5 +0.9
solid stress Fraxetin 3 mM; solid stress -0.2 -1.1 -4.3 +0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.5 -4.7 +0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.0 -5.5 +0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.4 -5.5 +0.0 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.3 -5.5 -0.2 +1.3
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.1 -1.2 +0.5 -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 +0.8 -4.8 -0.2 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.2 -0.1 -4.4 -0.9 +1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +0.3 -4.7 -0.4 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.5 -4.4 +0.1 +0.3
carbon source L-Glutamine (C) +0.4 -4.4 -0.0 +0.5 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.3 -3.8 +1.0 +0.2
phage P. simiae ORA MOI 10 -0.8 +0.8 +1.0 +0.5 -2.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.6 +0.5 -4.2 +0.2 +0.7
phage P. simiae OR Antrim MOI 10 +1.0 +0.6 +1.4 -0.8 -1.9
phage JP1 MOI 10 -0.5 +0.6 +2.4 -0.7 -1.5
phage JP1 MOI 1 -0.8 +1.0 +2.2 +1.1 +1.9
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