Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19580	PS417_19585	PS417_19590	PS417_19595	PS417_19600
phage	P. simiae Grant Run MOI 10	-0.6	-0.6	-0.6	-0.8	-2.9
phage	JP1 MOI 1	-0.4	-0.1	-0.4	-0.7	-2.9
phage	P. simiae ORA MOI 0.1	-0.3	-0.0	+0.1	-0.5	-3.7
phage	P. simiae ORA MOI 10	-0.3	-0.3	-0.9	-0.9	-1.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.3	-0.2	-0.6	-0.6	-2.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.0	+0.2	-0.5	-3.3
motility	outer cut, LB soft agar motility assay	+0.4	-0.2	-0.6	+0.2	-3.4
phage	P. simiae Grant Run MOI 10	-0.3	-0.8	-0.5	-0.6	-1.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.1	+0.1	-0.0	-2.8
phage	Wcs_1	+0.3	+0.1	-0.6	-0.1	-2.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.1	-1.0	-0.1	-2.0
phage	P. simiae Grant Run MOI 0.1	+0.0	-0.3	-0.9	-0.7	-1.2
phage	P. simiae OR Antrim MOI 1	-0.3	-0.2	+0.1	-0.5	-2.2
phage	P. simiae OR Antrim MOI 0.1	-0.0	-0.3	-0.4	-0.2	-2.1
phage	JP1 MOI 10	-0.9	-0.3	+0.2	-0.7	-1.1
phage	JP1 MOI 1	-0.1	-0.5	-1.2	-0.5	-0.7
soil	soil sample 5; outgrowth in LB	+0.7	-0.1	-0.0	-0.2	-3.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.5	-0.5	+0.4	+0.1	-2.3
phage	P. simiae OR Antrim MOI 0.1	-0.4	+0.0	+0.0	-0.8	-1.6
stress	Gentamicin 0.008 mg/ml	+0.3	-0.3	+0.5	-0.3	-2.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.4	-0.7	+0.1	-1.9
nophagecontrol	Only library	-0.8	-0.2	-1.1	-0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	-0.1	-0.0	-0.1	-3.4
soil	soil sample 3; outgrowth in LB	+0.5	-0.2	-0.1	-0.6	-2.0
carbon source	L-Valine (C)	-0.8	+0.1	-0.0	+0.3	-1.7
stress	methylglyoxal 0.032 vol%	+0.1	+0.1	+0.2	-0.5	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.3	-0.5	+0.2	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.5	-0.3	+0.5	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	-0.1	+0.4	-0.2	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.1	+0.7	-0.2	+1.7