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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3821 and GFF3822 are separated by 9 nucleotides
GFF3822 and GFF3823 are separated by 198 nucleotides
GFF3823 and GFF3824 are separated by 27 nucleotides
GFF3824 and GFF3825 are separated by 131 nucleotides
GFF3821 - RND efflux system, inner membrane transporter, at 7,142 to 10,312
GFF3821
GFF3822 - RND efflux system, membrane fusion protein, at 10,322 to 11,566
GFF3822
GFF3823 - FIG00581576: hypothetical protein, at 11,765 to 13,234
GFF3823
GFF3824 - Argininosuccinate lyase (EC 4.3.2.1), at 13,262 to 14,659
GFF3824
GFF3825 - Autolysin sensor kinase (EC 2.7.3.-), at 14,791 to 15,789
GFF3825
Group
Condition
GFF3821
GFF3822
GFF3823
GFF3824
GFF3825
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.0
-0.1
N.D.
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
-0.0
+0.0
N.D.
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.2
+0.0
N.D.
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
-0.1
+0.0
N.D.
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
+0.1
+0.0
N.D.
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.1
+0.1
N.D.
-0.8
complex community
Community=arabino-guar; Passage=4
+0.1
-0.2
+0.1
N.D.
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
-0.0
N.D.
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.0
+0.2
N.D.
-0.7
complex community
Community=Kojac gum; Passage=4
-0.0
-0.7
+0.1
N.D.
+0.1
complex community
Community=arabino-guar; Passage=4
+0.2
+0.3
-0.1
N.D.
-1.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
+0.2
N.D.
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.2
+0.1
N.D.
-0.8
phage
phage_bap4
-0.1
-0.1
+0.0
N.D.
+0.7
complex community
Community=arabino-guar; Passage=4
+0.3
-0.2
+0.2
N.D.
+0.4
complex community
Community=guar; Passage=4
+0.1
+0.4
-0.1
N.D.
+0.6
phage
phage_bap4
-0.1
-0.1
+0.0
N.D.
+1.1
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.1
+0.1
N.D.
+1.1
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.2
+0.1
N.D.
+1.3
phage
phage_bap4
+0.0
-0.1
-0.0
N.D.
+1.2
complex community
Community=Locust bean gum; Passage=4
-0.0
-0.2
+0.3
N.D.
+1.1
phage
phage_bap4
-0.0
+0.0
-0.1
N.D.
+1.3
complex community
Community=arabino-guar; Passage=4
+0.1
+0.3
-0.2
N.D.
+1.0
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.3
+0.4
N.D.
+1.2
complex community
Community=guar; Passage=4
-0.1
+0.4
+0.2
N.D.
+1.1
complex community
Community=guar; Passage=4
+0.2
+0.0
+0.4
N.D.
+1.0
phage
phage_bap4
-0.0
-0.3
-0.2
N.D.
+4.0
phage
phage_bap4
-0.1
-0.1
-0.2
N.D.
+4.0
phage
phage_bap4
+0.0
-0.1
-0.2
N.D.
+4.2
phage
phage_bap4
+0.0
-0.1
-0.2
N.D.
+4.2
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