Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19555 and PS417_19560 are separated by 42 nucleotidesPS417_19560 and PS417_19565 are separated by 94 nucleotidesPS417_19565 and PS417_19570 are separated by 153 nucleotidesPS417_19570 and PS417_19575 are separated by 13 nucleotides PS417_19555: PS417_19555 - RNA polymerase sigma70, at 4,253,491 to 4,254,042 _19555 PS417_19560: PS417_19560 - amino acid ABC transporter substrate-binding protein, at 4,254,085 to 4,254,873 _19560 PS417_19565: PS417_19565 - TetR family transcriptional regulator, at 4,254,968 to 4,255,591 _19565 PS417_19570: PS417_19570 - terpene utilization protein AtuA, at 4,255,745 to 4,257,523 _19570 PS417_19575: PS417_19575 - 2,4-dienoyl-CoA reductase, at 4,257,537 to 4,258,409 _19575
Group Condition PS417_19555 PS417_19560 PS417_19565 PS417_19570 PS417_19575
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -3.6 +0.3 -0.2 +0.0 N.D.
stress LB_noSalt with Chloride 1100 mM +0.1 -3.3 -0.1 -0.1 N.D.
stress LB_noSalt with Chloride 1100 mM +0.4 -3.1 -0.2 -0.2 N.D.
phage Wcs_1 +0.4 -2.4 -0.6 +0.1 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -1.4 +1.0 -0.9 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +2.1 -0.6 +0.2 N.D.
soil soil sample 5; outgrowth in LB +0.3 +2.0 -0.7 +0.0 N.D.
nitrogen source Cytosine (N) -0.1 +2.3 -0.4 -0.1 N.D.
seeds Growth on radish seeds for 72 hours +0.6 +2.0 -1.0 +0.2 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 +2.6 -0.8 -0.0 N.D.
soil soil sample 6; outgrowth in LB +0.7 +2.2 -0.5 -0.1 N.D.
soil soil sample 8; outgrowth in LB +0.1 +2.2 +0.4 -0.2 N.D.
soil soil sample 3; outgrowth in LB +0.3 +2.4 -0.2 -0.0 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +0.0 +3.2 -0.2 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.1 +2.5 +0.2 +0.2 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 +3.4 -0.4 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.8 +1.9 -0.0 -0.2 N.D.
root root sample 6; outgrowth in LB -0.2 +4.2 -0.1 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.0 +4.9 -0.8 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.0 +2.2 +0.6 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +4.4 -0.2 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +3.6 +0.6 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +2.5 +2.7 -0.0 -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +4.4 +0.6 -0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +4.4 +0.3 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 +4.3 +0.5 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +5.2 +0.4 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +2.8 +3.2 +0.3 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 +5.5 -0.1 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.2 +5.9 -0.2 +0.1 N.D.
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