Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19530	PS417_19535	PS417_19540	PS417_19545	PS417_19550
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.4	-0.0	+0.0	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.2	+0.1	+0.0	-0.5
phage	JP1 MOI 0.1	N.D.	-0.8	+0.1	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.5	-0.1	-0.1	-0.5
carbon source	L-Histidine (C)	N.D.	-0.6	-0.0	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.6	-0.0	-0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	+0.0	-0.1	-0.8
phage	JP1 MOI 10	N.D.	-0.6	+0.1	+0.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.3	+0.0	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.8	-0.0	+0.2	-0.3
soil	soil sample 2; outgrowth in LB	N.D.	-0.7	-0.2	+0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.4	+0.2	+0.1	-0.6
phage	JP1 MOI 1	N.D.	-0.6	-0.0	-0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.1	+0.3	-0.4
phage	P. simiae ORA MOI 0.1	N.D.	+0.2	+0.1	+0.1	-0.8
seeds	Growth on radish seeds for 24 hours	N.D.	+0.4	+0.1	+0.0	-0.6
motility	outer cut, LB soft agar motility assay	N.D.	+0.2	+0.0	+0.3	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.7	+0.1	+0.1	+0.7
seeds	Growth on radish seeds for 72 hours	N.D.	+0.4	+0.3	+0.0	-0.5
phage	P. simiae Grant Run MOI 0.1	N.D.	+0.5	+0.2	-0.1	-0.5
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-0.3	-0.0	+0.2	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.1	-0.2	+0.2	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+1.2	-0.1	-0.6	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+1.5	-0.0	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.0	+0.3	+0.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.0	+0.2	+0.2	+0.8
solid stress	Fraxetin 0.5 mM; solid stress	N.D.	+0.4	+0.0	+0.3	+0.4
motility	inner cut, LB soft agar motility assay	N.D.	+0.4	+0.1	+0.3	+0.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-0.1	-0.0	+1.5	+1.8
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-0.0	+0.1	+2.2	+2.5