Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19500	PS417_19505	PS417_19510	PS417_19515	PS417_19520
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.2	-1.6	-0.3	-0.4
soil	soil sample 5; outgrowth in LB	-0.6	-0.7	-1.1	+0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.5	+0.2	-0.9	-0.9
phage	P. simiae Grant Run MOI 0.1	+0.1	-1.0	-0.5	-0.4	-1.0
seeds	Growth on radish seeds for 72 hours	+1.0	-1.2	-0.2	-1.7	+0.1
seeds	Growth on radish seeds for 72 hours	+1.0	-1.2	-0.4	-0.3	-1.2
phage	P. simiae OR Antrim MOI 10	+0.5	-1.1	-0.8	-0.9	+0.4
stress	methylglyoxal 0.032 vol%	+0.5	-0.6	-1.0	+0.3	-1.0
phage	P. simiae Grant Run MOI 10	+0.4	+0.6	-1.1	-1.0	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-0.7	-1.1	-0.3	+1.1
phage	P. simiae Grant Run MOI 0.1	-0.2	+0.7	-0.6	-0.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-1.7	-0.0	+0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.9	-0.8	-0.2	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.8	-0.6	-0.4	+0.2	-0.6
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-1.1	-0.7	+0.4	+0.5	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.7	-0.8	-0.1	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.9	+0.5	-0.8	-1.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	+0.8	+0.3	-1.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.9	-0.3	-0.6	+1.1
no phage control	Time6-nophage	+0.8	-0.3	-0.3	-1.0	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	+1.3	+0.3	-0.3	-0.4
motility	inner cut, LB soft agar motility assay	+0.5	+1.2	+0.2	-0.2	-1.1
phage	P. simiae OR Antrim MOI 0.1	+1.2	+0.2	-0.2	-0.9	+0.2
soil	soil sample 7; outgrowth in LB	+0.8	+1.2	-0.1	-0.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+1.8	+0.3	-0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+1.2	+0.1	+0.3	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+2.3	+0.4	-0.8	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+1.5	+0.7	-0.0	-0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.0	+4.2	+0.1	-0.2	-0.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+1.5	+1.6	+0.1	+1.2	+1.0