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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF379 and GFF380 overlap by 4 nucleotides
GFF380 and GFF381 are separated by 57 nucleotides
GFF381 and GFF382 are separated by 102 nucleotides
GFF382 and GFF383 are separated by 10 nucleotides
GFF379 - Tim44-like domain protein, at 370,113 to 370,811
GFF379
GFF380 - Membrane-bound lytic murein transglycosylase A, at 370,808 to 372,073
GFF380
GFF381 - hypothetical protein, at 372,131 to 372,616
GFF381
GFF382 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 372,719 to 374,413
GFF382
GFF383 - Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8), at 374,424 to 375,041
GFF383
Group
Condition
GFF379
GFF380
GFF381
GFF382
GFF383
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-2.5
-0.0
-0.4
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-2.1
-0.1
-0.5
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.4
-0.2
-1.0
-0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-1.9
-0.0
+0.3
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-1.5
+0.1
+0.1
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-1.1
-0.0
-0.4
+0.1
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.8
+0.0
-0.2
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.9
-0.1
-0.1
+0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.6
-0.1
-0.1
-0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
-0.2
-0.1
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
-0.1
+0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
-0.1
-0.7
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.4
-0.0
+0.1
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.0
+0.0
-0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.1
+0.0
+0.0
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.0
-0.1
+0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.1
+0.1
+0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
+0.2
+0.2
-0.0
+0.3
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