Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19475	PS417_19480	PS417_19490	PS417_19495	PS417_19500
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.7	-0.2	+0.2	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-1.2	+0.1	-0.2	-0.5
phage	P. simiae Grant Run MOI 10	-0.8	-0.6	-0.7	-0.1	+0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	-0.5	-0.4	-0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.3	+0.1	-0.6	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.8	+0.4	+0.2	-1.2
stress	Cisplatin 0.01 mg/ml	+0.5	-0.8	-0.1	-0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	-0.4	+0.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.0	-0.2	+0.6	-0.4
stress	Doxycycline hyclate 0.001 mg/ml	-0.6	+0.6	-0.1	-0.0	-1.0
phage	Wcs_1	-0.5	-1.0	-0.1	-0.1	+0.6
solid stress	Fraxetin 3 mM; solid stress	-0.5	-1.0	+0.3	+0.0	+0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.3	-0.4	-0.1	+0.8
solid stress	Fraxetin 2 mM; solid stress	-0.6	-1.1	+0.5	+0.2	+0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.0	-0.5	-0.4	-0.2	+1.0
stress	methylglyoxal 0.032 vol%	-0.8	-0.4	+1.0	-0.4	+0.5
solid stress	Fraxetin 3 mM; solid stress	-0.1	-1.2	+0.6	+0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.3	+0.2	-0.0	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.4	-0.9	+0.5	+0.6
stress	Gentamicin 0.008 mg/ml	-1.3	+1.1	+0.3	+0.2	-0.3
phage	P. simiae OR Antrim MOI 0.1	-0.4	-0.1	-0.4	+0.0	+1.2
phage	P. simiae OR1 MOI 0.1	+0.5	-0.5	+0.3	-0.3	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.5	+0.8	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.2	+0.9	+0.3	+0.4
soil	soil sample 7; outgrowth in LB	+0.6	-0.5	-0.1	+0.2	+0.8
seeds	Growth on radish seeds for 24 hours	+0.4	-0.6	+0.5	+0.2	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.2	+0.9	+0.2	+1.1
seeds	Growth on radish seeds for 72 hours	+0.2	+0.4	-0.2	+0.8	+1.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.2	+0.3	+0.2	+0.3	+1.5
stress	1-ethyl-3-methylimidazolium acetate 35 mM	-0.4	-0.7	+3.3	+0.6	+0.4