Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19460 and PS417_19465 are separated by 166 nucleotidesPS417_19465 and PS417_19470 are separated by 3 nucleotidesPS417_19470 and PS417_19475 are separated by 96 nucleotidesPS417_19475 and PS417_19480 are separated by 171 nucleotides PS417_19460: PS417_19460 - septum formation inhibitor, at 4,220,114 to 4,220,851 _19460 PS417_19465: PS417_19465 - cell division inhibitor MinD, at 4,221,018 to 4,221,830 _19465 PS417_19470: PS417_19470 - cell division topological specificity factor, at 4,221,834 to 4,222,088 _19470 PS417_19475: PS417_19475 - pseudouridine synthase, at 4,222,185 to 4,222,820 _19475 PS417_19480: PS417_19480 - aminopeptidase, at 4,222,992 to 4,224,281 _19480
Group Condition PS417_19460 PS417_19465 PS417_19470 PS417_19475 PS417_19480
solid stress Fraxetin 2 mM; solid stress N.D. N.D. N.D. -0.6 -1.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. -0.4 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.4 -1.2
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. -0.5 -1.0
phage Wcs_1 N.D. N.D. N.D. -0.5 -1.0
phage P. simiae Grant Run MOI 10 N.D. N.D. N.D. -0.8 -0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. -0.7 -0.6
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. -0.4 -0.9
solid stress Fraxetin 3 mM; solid stress N.D. N.D. N.D. -0.1 -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.4 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.1 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.9 -0.3
stress methylglyoxal 0.032 vol% N.D. N.D. N.D. -0.8 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.5 -0.7
solid stress Fraxetin 2 mM; solid stress N.D. N.D. N.D. -0.5 -0.7
stress 1-ethyl-3-methylimidazolium acetate 35 mM N.D. N.D. N.D. -0.4 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.1 -1.0
supernatant control Vogels_fungal_media 0.1X N.D. N.D. N.D. -0.8 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.4 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.5 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.4 -0.7
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. -0.4 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -0.9 -0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. -0.9 +0.4
stress Cisplatin 0.01 mg/ml N.D. N.D. N.D. +0.5 -0.8
stress Gentamicin 0.008 mg/ml N.D. N.D. N.D. -1.3 +1.1
nitrogen source Urea (N) N.D. N.D. N.D. +0.5 -0.6
stress Doxycycline hyclate 0.001 mg/ml N.D. N.D. N.D. -0.6 +0.6
soil soil sample 7; outgrowth in LB N.D. N.D. N.D. +0.6 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +0.9 -0.3
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