Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19455 and PS417_19460 are separated by 119 nucleotidesPS417_19460 and PS417_19465 are separated by 166 nucleotidesPS417_19465 and PS417_19470 are separated by 3 nucleotidesPS417_19470 and PS417_19475 are separated by 96 nucleotides PS417_19455: PS417_19455 - lipid A biosynthesis lauroyl acyltransferase, at 4,219,059 to 4,219,994 _19455 PS417_19460: PS417_19460 - septum formation inhibitor, at 4,220,114 to 4,220,851 _19460 PS417_19465: PS417_19465 - cell division inhibitor MinD, at 4,221,018 to 4,221,830 _19465 PS417_19470: PS417_19470 - cell division topological specificity factor, at 4,221,834 to 4,222,088 _19470 PS417_19475: PS417_19475 - pseudouridine synthase, at 4,222,185 to 4,222,820 _19475
Group Condition PS417_19455 PS417_19460 PS417_19465 PS417_19470 PS417_19475
stress Gentamicin 0.008 mg/ml N.D. N.D. N.D. N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. N.D. N.D. -0.9
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.9
stress methylglyoxal 0.032 vol% N.D. N.D. N.D. N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. -0.8
supernatant control Vogels_fungal_media 0.1X N.D. N.D. N.D. N.D. -0.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -0.8
phage P. simiae Grant Run MOI 10 N.D. N.D. N.D. N.D. -0.8
carbon source Carbon source L-Ornithine 10 mM N.D. N.D. N.D. N.D. -0.8
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.7
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.7
carbon source Carbon source L-Ornithine 10 mM N.D. N.D. N.D. N.D. -0.7
stress Doxycycline hyclate 0.001 mg/ml N.D. N.D. N.D. N.D. -0.6
no stress control on plate growth on LB_noSalt plate N.D. N.D. N.D. N.D. -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. N.D. -0.6
stress R2A with Fusaric 120 ug/mL N.D. N.D. N.D. N.D. -0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. N.D. -0.6
stress R2A with Fusaric 120 ug/mL N.D. N.D. N.D. N.D. -0.6
solid stress Fraxetin 2 mM; solid stress N.D. N.D. N.D. N.D. -0.6
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. N.D. N.D. -0.6
carbon source Carbon source L-Ornithine 5 mM N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. N.D. -0.6
soil soil sample 7; outgrowth in LB N.D. N.D. N.D. N.D. +0.6
soil soil sample 2; outgrowth in LB N.D. N.D. N.D. N.D. +0.6
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.9
soil soil sample 5; outgrowth in LB N.D. N.D. N.D. N.D. +0.9
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PS417_19460
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