Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19420	PS417_19425	PS417_19430	PS417_19435	PS417_19440
carbon source	Inosine (C)	-4.7	-3.4	-2.1	-1.7	-0.5
carbon source	Inosine (C)	-4.2	-3.5	-2.3	-2.0	-0.0
carbon source	2'-Deoxyinosine 5 mM (C)	-2.3	-2.8	-2.8	-2.6	-0.2
nitrogen source	Inosine (N)	-3.0	-2.7	-1.7	-1.2	-0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-2.2	-2.7	-2.3	-1.6	-0.1
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	-2.8	-2.4	-1.6	-1.2	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-2.4	-1.3	-2.3	-1.7	+0.0
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	-2.1	-1.5	-1.7	-1.8	-0.6
soil	soil sample 5; outgrowth in LB	-0.4	-4.4	-0.8	+0.0	-0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-2.2	+0.0	-1.9	-1.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-4.9	+0.2	-0.5	+0.2
phage	P. simiae ORA MOI 0.1	+0.2	-4.5	-0.3	-0.1	+0.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.4	-3.9	-0.3	+0.0	+0.1
soil	soil sample 2; outgrowth in LB	-0.8	-1.2	-1.8	-0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-1.3	-1.2	-0.7	-0.2
soil	soil sample 3; outgrowth in LB	-0.8	-2.4	-0.4	+0.2	-0.7
soil	soil sample 6; outgrowth in LB	-0.4	-2.7	-0.3	-0.2	-0.1
seeds	Growth on radish seeds for 24 hours	-1.3	-2.3	-0.3	+0.6	+0.2
root	root sample 6; outgrowth in LB	-1.4	-1.5	-0.6	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	-1.6	-0.7	-0.0	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-1.8	-0.7	+0.1	+0.1
seeds	Growth on radish seeds for 72 hours	-0.6	-2.3	+0.2	+0.3	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-2.1	+0.3	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-2.1	-1.3	+0.1	+1.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.0	+0.0	-1.6	-0.3	+0.6
phage	P. simiae OR Antrim MOI 0.1	+0.3	-2.1	+0.9	+0.3	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+1.3	-0.0	-1.0	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.7	+0.4	-0.9	-0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+2.2	+0.2	+0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+1.1	+0.6	+0.4	+1.0