Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19400 and PS417_19405 overlap by 14 nucleotidesPS417_19405 and PS417_19410 are separated by 154 nucleotidesPS417_19410 and PS417_19415 are separated by 396 nucleotidesPS417_19415 and PS417_19420 overlap by 4 nucleotides PS417_19400: PS417_19400 - amino acid transporter LysE, at 4,203,895 to 4,204,530 _19400 PS417_19405: PS417_19405 - hypothetical protein, at 4,204,517 to 4,209,751 _19405 PS417_19410: PS417_19410 - 5-hydroxyisourate hydrolase, at 4,209,906 to 4,210,259 _19410 PS417_19415: PS417_19415 - allantoinase, at 4,210,656 to 4,211,582 _19415 PS417_19420: PS417_19420 - OHCU decarboxylase, at 4,211,579 to 4,212,094 _19420
Group Condition PS417_19400 PS417_19405 PS417_19410 PS417_19415 PS417_19420
carbon source Inosine (C) -0.5 -0.1 N.D. -4.4 -4.7
carbon source 2'-Deoxyinosine 5 mM (C) -1.2 -0.1 N.D. -5.1 -2.4
carbon source Inosine (C) -0.8 -0.1 N.D. -3.5 -4.2
nitrogen source Inosine (N) -0.5 +0.0 N.D. -3.4 -3.0
carbon source 2'-Deoxyinosine 5 mM (C) -0.8 -0.1 N.D. -2.8 -2.3
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -0.1 +0.1 N.D. -2.5 -2.8
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 +0.0 N.D. -3.1 -2.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 -0.1 N.D. -1.9 -2.2
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) +0.2 +0.0 N.D. -2.0 -2.1
seeds Growth on radish seeds for 24 hours -0.2 +0.2 N.D. -1.8 -1.3
soil soil sample 5; outgrowth in LB +0.2 +0.3 N.D. -3.0 -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.2 N.D. -2.1 -1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.0 N.D. -2.7 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.2 N.D. -2.5 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.1 N.D. -2.2 -0.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.3 N.D. -2.0 +0.0
seeds Growth on radish seeds for 72 hours +0.1 -0.1 N.D. -1.8 -0.6
liquid stress Fraxetin 1 mM; liquid stress -0.6 +0.0 N.D. -1.5 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 -0.0 N.D. -1.4 -0.6
soil soil sample 7; outgrowth in LB -0.1 +0.3 N.D. -2.0 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 +0.0 N.D. -1.3 +0.3
root root sample 6; outgrowth in LB +0.7 +0.4 N.D. -0.9 -1.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.1 -0.2 N.D. -1.4 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.2 N.D. -1.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.4 +0.2 N.D. -0.8 -0.6
phage JP1 MOI 1 +1.3 -0.1 N.D. +0.3 -0.7
phage P. simiae ORA MOI 0.1 -0.4 +0.1 N.D. +1.4 +0.2
phage P. simiae OR Antrim MOI 10 +0.2 -0.1 N.D. +0.9 +1.0
phage P. simiae ORA MOI 0.1 +0.4 -0.0 N.D. +1.1 +0.7
phage JP1 MOI 0.1 +0.9 -0.1 N.D. +1.1 +0.4
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