Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19395 and PS417_19400 are separated by 13 nucleotidesPS417_19400 and PS417_19405 overlap by 14 nucleotidesPS417_19405 and PS417_19410 are separated by 154 nucleotidesPS417_19410 and PS417_19415 are separated by 396 nucleotides PS417_19395: PS417_19395 - guanine permease, at 4,202,535 to 4,203,881 _19395 PS417_19400: PS417_19400 - amino acid transporter LysE, at 4,203,895 to 4,204,530 _19400 PS417_19405: PS417_19405 - hypothetical protein, at 4,204,517 to 4,209,751 _19405 PS417_19410: PS417_19410 - 5-hydroxyisourate hydrolase, at 4,209,906 to 4,210,259 _19410 PS417_19415: PS417_19415 - allantoinase, at 4,210,656 to 4,211,582 _19415
Group Condition PS417_19395 PS417_19400 PS417_19405 PS417_19410 PS417_19415
carbon source 2'-Deoxyinosine 5 mM (C) -2.6 -1.2 -0.1 N.D. -5.1
carbon source Inosine (C) -1.9 -0.5 -0.1 N.D. -4.4
carbon source Inosine (C) -1.9 -0.8 -0.1 N.D. -3.5
carbon source 2'-Deoxyinosine 5 mM (C) -2.2 -0.8 -0.1 N.D. -2.8
nitrogen source Inosine (N) -0.3 -0.5 +0.0 N.D. -3.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 +0.1 +0.0 N.D. -3.1
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -0.5 -0.1 +0.1 N.D. -2.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -0.1 +0.0 N.D. -2.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.0 -0.4 -0.1 N.D. -2.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.3 -0.3 N.D. -2.0
soil soil sample 5; outgrowth in LB +0.0 +0.2 +0.3 N.D. -3.0
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) -0.5 +0.2 +0.0 N.D. -2.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 -0.1 -0.1 N.D. -1.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 -0.5 +0.2 N.D. -2.5
seeds Growth on radish seeds for 72 hours -0.4 +0.1 -0.1 N.D. -1.8
liquid stress Fraxetin 1 mM; liquid stress -0.0 -0.6 +0.0 N.D. -1.5
seeds Growth on radish seeds for 24 hours -0.0 -0.2 +0.2 N.D. -1.8
soil soil sample 7; outgrowth in LB -0.0 -0.1 +0.3 N.D. -2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 -0.2 -0.0 N.D. -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 -0.5 +0.0 N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.4 +0.1 N.D. -1.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.3 +0.2 N.D. -2.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 +0.1 -0.2 N.D. -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.5 +0.2 N.D. -1.3
root root sample 6; outgrowth in LB +0.3 +0.7 +0.4 N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 +1.4 +0.2 N.D. -0.8
phage JP1 MOI 1 -0.2 +1.3 -0.1 N.D. +0.3
phage P. simiae ORA MOI 0.1 +0.5 -0.4 +0.1 N.D. +1.4
phage JP1 MOI 0.1 -0.2 +0.9 -0.1 N.D. +1.1
phage P. simiae OR Antrim MOI 1 +0.4 +0.8 +0.2 N.D. +0.7
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