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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3774 and GFF3775 overlap by 4 nucleotides
GFF3775 and GFF3776 are separated by 167 nucleotides
GFF3776 and GFF3777 are separated by 6 nucleotides
GFF3777 and GFF3778 are separated by 200 nucleotides
GFF3774 - hypothetical protein, at 265,400 to 266,797
GFF3774
GFF3775 - Two-component transcriptional response regulator, OmpR family, at 266,794 to 267,468
GFF3775
GFF3776 - no description, at 267,636 to 268,025
GFF3776
GFF3777 - Prolyl endopeptidase (EC 3.4.21.26), at 268,032 to 270,083
GFF3777
GFF3778 - Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase, at 270,284 to 271,984
GFF3778
Group
Condition
GFF3774
GFF3775
GFF3776
GFF3777
GFF3778
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.1
-2.1
-0.1
-0.1
complex community
Community=guar; Passage=4
+0.1
-0.7
-0.4
-0.5
-0.1
complex community
Community=guar; Passage=4
-0.2
-0.6
-0.5
+0.2
+0.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
-0.4
-0.4
-0.1
-0.1
phage
phage_bap4
+0.1
-0.3
-0.6
-0.1
-0.1
phage
phage_bap4
-0.3
-0.2
-0.4
+0.1
-0.1
no phage control
no phage control
-0.0
-0.3
-0.6
+0.0
-0.0
no phage control
no phage control
+0.3
-0.2
-0.5
+0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.6
-0.7
-0.6
+0.2
+0.1
complex community
Community=Kojac gum; Passage=4
+0.1
-0.6
+0.0
+0.4
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.4
-0.2
-0.3
-0.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
-0.5
+0.3
+0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
-0.5
+0.2
+0.1
+0.1
complex community
Community=guar; Passage=4
-0.7
+0.6
+0.0
+0.1
+0.2
complex community
Community=arabino-guar; Passage=4
+0.3
-0.4
-0.0
+0.4
-0.0
complex community
Community=arabino-guar; Passage=4
-0.4
+0.3
+0.2
+0.1
+0.0
complex community
Community=Locust bean gum; Passage=1
-0.3
+0.0
+0.5
+0.0
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.7
+0.4
-0.1
-0.3
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.4
-0.2
+0.2
+0.2
complex community
Community=Locust bean gum; Passage=4
+0.4
+0.4
-0.3
+0.0
+0.0
complex community
Community=guar; Passage=4
+0.3
+0.0
-0.1
+0.2
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
+0.2
+0.1
+0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
+0.6
-0.1
+0.0
+0.1
complex community
Community=arabino-guar; Passage=4
+0.5
+0.1
+0.5
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
+0.1
+0.2
+0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.2
+0.4
+0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
+0.4
+0.3
+0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.4
+0.7
-0.1
+0.2
+0.0
complex community
Community=arabino-guar; Passage=4
+0.5
+0.5
+0.5
+0.1
-0.3
complex community
Community=Locust bean gum; Passage=4
+0.5
+0.2
+0.5
+0.2
+0.0
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