Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19305 and PS417_19310 overlap by 4 nucleotidesPS417_19310 and PS417_19315 are separated by 73 nucleotidesPS417_19315 and PS417_19320 are separated by 143 nucleotidesPS417_19320 and PS417_19325 are separated by 99 nucleotides PS417_19305: PS417_19305 - acireductone dioxygenase, at 4,187,066 to 4,187,596 _19305 PS417_19310: PS417_19310 - MFS transporter, at 4,187,593 to 4,188,756 _19310 PS417_19315: PS417_19315 - chorismate synthase, at 4,188,830 to 4,189,921 _19315 PS417_19320: PS417_19320 - alpha/beta hydrolase, at 4,190,065 to 4,191,027 _19320 PS417_19325: PS417_19325 - hypothetical protein, at 4,191,127 to 4,191,933 _19325
Group Condition PS417_19305 PS417_19310 PS417_19315 PS417_19320 PS417_19325
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -0.0 N.D. N.D. -0.9
carbon source octanoate (C) -1.7 -0.1 N.D. N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 +0.0 N.D. N.D. -0.9
agar plate interaction control Taped volatile agar plate with no fungus -1.0 -0.1 N.D. N.D. -0.9
stress 1-ethyl-3-methylimidazolium acetate 35 mM -1.5 -0.1 N.D. N.D. -0.2
phage P. simiae OR1 MOI 0.1 -0.8 -0.0 N.D. N.D. -0.8
phage JP1 MOI 10 -1.2 -0.0 N.D. N.D. -0.3
phage JP1 MOI 10 -1.2 -0.4 N.D. N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -0.1 N.D. N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.0 +0.1 N.D. N.D. -0.6
phage P. simiae Grant Run MOI 0.1 -0.9 -0.3 N.D. N.D. -0.3
stress 6-methoxy-2(3H)-benzoxazolone 2.5 mM -1.0 +0.0 N.D. N.D. -0.4
carbon source Carbon source D-Mannitol 10 mM -0.9 -0.1 N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.3 N.D. N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.3 N.D. N.D. -1.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x -0.6 -0.2 N.D. N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.0 N.D. N.D. -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.0 N.D. N.D. -0.9
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.1 +0.1 N.D. N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.6 +0.4 N.D. N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.3 N.D. N.D. -0.4
phage P. simiae OR Antrim MOI 10 -0.9 +0.4 N.D. N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -0.4 N.D. N.D. -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 +0.3 N.D. N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.3 N.D. N.D. -0.6
soil soil sample 5; outgrowth in LB -1.0 +0.1 N.D. N.D. +0.2
seeds Growth on radish seeds for 72 hours +0.8 -0.2 N.D. N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.9 +0.0 N.D. N.D. -0.5
seeds Growth on radish seeds for 72 hours -0.4 +0.5 N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +0.1 N.D. N.D. +0.8
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