Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19275	PS417_19280	PS417_19285	PS417_19290	PS417_19295
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.4	+0.3	-1.2	+0.3	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-0.1	-2.7	-0.0	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.6	+0.1	-1.4	+0.1	-0.1
motility	outer cut, LB soft agar motility assay	-0.4	-0.3	-2.0	+0.1	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	+0.2	-2.3	-0.2	+0.5
phage	P. simiae ORA MOI 0.1	-2.2	+0.1	-0.3	+0.0	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-0.3	-1.9	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.4	-2.0	+0.1	-0.1
phage	JP1 MOI 1	-0.7	+0.0	-1.5	-0.3	+0.4
no phage control	Time6-nophage	-1.5	+0.3	-0.2	+0.0	-0.6
soil	soil sample 2; outgrowth in LB	-0.3	-0.3	-1.8	-0.1	+0.7
phage	JP1 MOI 10	-0.7	+0.1	-1.4	-0.2	+0.5
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.2	+0.1	-0.8	-0.1	+0.6
stress	LB_noSalt with Chloride 1100 mM	-0.6	-0.0	+0.6	+0.0	-1.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	-0.0	-1.0	-0.0	+0.7
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-1.0	+0.4	-0.9	-0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.6	-0.1	-2.0	+0.2	+0.4
phage	P. simiae Grant Run MOI 10	+0.4	-0.1	-1.4	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.8	+0.2	-1.1	+0.0	-0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.7	-0.0	+1.2	-0.0	-0.0
carbon source	octanoate (C)	+1.0	+0.1	-1.4	-0.2	+0.4
root	root sample 6; outgrowth in LB	-0.4	+0.2	-1.1	+0.2	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	+0.3	-1.5	-0.1	+0.4
soil	soil sample 5; outgrowth in LB	-1.1	-0.1	+0.8	+0.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.9	+0.1	+0.6	+0.2	+0.9
phage	JP1 MOI 0.1	+0.8	+0.3	+0.6	-0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+2.2	+0.0	+0.3	+0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7	+0.5	-0.4	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.1	+2.6	+0.1	-0.3
phage	P. simiae Grant Run MOI 0.1	+1.1	+0.5	+1.2	+0.2	+0.3