Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_19265	PS417_19270	PS417_19275	PS417_19280	PS417_19285
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.2	-4.4	+0.3	-1.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.3	-1.6	+0.1	-1.4
motility	outer cut, LB soft agar motility assay	-0.3	+0.3	-0.4	-0.3	-2.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.8	+0.3	-1.1	-0.1	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.6	-0.7	-0.4	-0.1	-2.7
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	+0.8	-0.5	+0.2	-2.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.2	-0.6	+0.4	-2.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.9	-0.3	-0.5	-0.3	-1.9
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	-0.8	-1.7	-0.0	+1.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	+0.3	+0.6	-0.1	-2.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	-0.7	-0.6	-0.5	-0.4
phage	JP1 MOI 10	+0.3	-1.6	+0.7	+0.4	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0	-0.3	-0.9	-0.2	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.4	-0.8	-1.0	+0.3	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.2	-0.6	-0.3	-0.4	-0.6
phage	JP1 MOI 10	-0.0	+1.8	-0.7	+0.1	-1.4
phage	JP1 MOI 1	+0.2	+2.0	-0.7	+0.0	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.5	+1.1	+0.3	-1.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.7	-0.4	-0.2	-0.6	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.7	-0.2	-0.6	-0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.2	+1.7	+0.5	-0.4
seeds	Growth on radish seeds for 72 hours	+0.6	-0.4	-0.4	+0.6	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+3.0	-0.2	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.2	+1.2	+0.2	-0.5
phage	P. simiae Grant Run MOI 0.1	+0.0	-0.8	+1.1	+0.5	+1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.1	+0.3	-0.1	+2.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.8	-0.7	+0.8	-0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+2.0	+0.1	-0.5	+0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0	+0.6	+0.9	-0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6	+1.1	+2.2	+0.0	+0.3