Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19240	PS417_19245	PS417_19255	PS417_19265	PS417_19270
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	N.D.	-0.6	-0.2	-1.1
seeds	Growth on radish seeds for 24 hours	-1.0	N.D.	-0.6	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	-0.5	-0.9	-0.3
seeds	Growth on radish seeds for 72 hours	-0.9	N.D.	-0.3	-0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.2	-0.6	-1.1
stress	Doxycycline hyclate 0.001 mg/ml	+0.1	N.D.	-0.5	-0.4	-1.1
phage	JP1 MOI 10	-0.1	N.D.	-0.0	+0.3	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	N.D.	+0.6	-0.3	-0.6
soil	soil sample 7; outgrowth in LB	-0.7	N.D.	+0.6	-0.2	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6	N.D.	-0.3	+1.8	-0.7
phage	JP1 MOI 0.1	-0.7	N.D.	-0.1	+0.6	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	N.D.	+0.6	-1.0	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	N.D.	-0.0	+1.6	-0.7
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.6	N.D.	+0.2	-0.2	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	N.D.	+0.3	+1.2	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	N.D.	+0.9	+1.4	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.0	N.D.	-0.1	-0.2	+0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	N.D.	+0.6	+1.0	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	N.D.	+0.5	+1.7	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.5	N.D.	-0.3	-0.6	+1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	N.D.	+0.5	+1.7	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.4	N.D.	+0.5	+1.2	-0.4
motility	inner cut, LB soft agar motility assay	+0.7	N.D.	+0.4	+0.2	+0.8
phage	JP1 MOI 1	+0.2	N.D.	-0.3	+0.2	+2.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	N.D.	-0.2	-0.5	+3.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	N.D.	+0.3	+1.0	+0.6
phage	JP1 MOI 10	+0.6	N.D.	+0.3	-0.0	+1.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	N.D.	-0.2	+0.4	+1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.9	N.D.	+0.2	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.4	N.D.	-0.2	+0.2	+2.0