Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3755 and GFF3756 are separated by 91 nucleotidesGFF3756 and GFF3757 are separated by 96 nucleotidesGFF3757 and GFF3758 are separated by 231 nucleotidesGFF3758 and GFF3759 are separated by 34 nucleotides GFF3755 - Transcriptional regulator, GntR family, at 249,102 to 249,788 GFF3755 GFF3756 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 249,880 to 250,371 GFF3756 GFF3757 - hypothetical protein, at 250,468 to 250,890 GFF3757 GFF3758 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 251,122 to 252,396 GFF3758 GFF3759 - Uridine kinase family protein YggC homolog, at 252,431 to 253,084 GFF3759
Group Condition GFF3755 GFF3756 GFF3757 GFF3758 GFF3759
complex community Community=Kojac gum; Passage=4 -2.4 -0.3 -0.4 +0.3 +0.3
complex community Community=Locust bean gum; Passage=4 -1.9 -0.1 -0.1 -0.0 +0.1
complex community Community=arabino-guar; Passage=4 -1.5 -0.1 -0.5 +0.6 +0.1
complex community Community=arabino-guar; Passage=4 -1.3 +0.2 +0.1 -0.2 -0.1
complex community Community=Locust bean gum; Passage=4 -1.5 +0.5 -0.2 +0.3 -0.2
complex community Community=guar; Passage=4 -0.9 -0.7 -0.1 +0.5 +0.3
complex community Community=guar; Passage=4 -1.0 -0.1 +0.2 +0.3 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.5 -0.1 +0.0 +0.0 -0.0
complex community Community=arabino-guar; Passage=4 -1.0 +0.0 +0.1 +0.4 -0.0
complex community Community=arabino-guar; Passage=4 -1.2 -0.1 +0.2 +0.5 +0.0
phage phage_bap4 +0.1 -0.3 -0.1 -0.2 -0.0
complex community Community=guar; Passage=4 -0.7 +0.1 -0.3 +0.4 +0.0
no phage control no phage control +0.0 -0.2 +0.1 -0.4 -0.0
phage phage_bap4 -0.2 +0.0 +0.0 -0.4 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.2 +0.1 -0.2 -0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.0 -0.3 -0.0 +0.1
phage phage_bap4 -0.1 +0.1 +0.0 -0.3 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 +0.2 -0.0 -0.1 -0.1
phage phage_bap4 +0.1 +0.0 +0.0 -0.5 +0.0
phage phage_bap4 +0.1 +0.0 +0.2 -0.5 -0.0
no phage control no phage control -0.0 +0.1 +0.1 -0.4 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.2 -0.2 -0.1 -0.0
phage phage_bap4 +0.2 +0.1 -0.2 -0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.0 -0.1 -0.2 +0.2 +0.1
complex community Community=Locust bean gum; Passage=4 -0.9 +0.3 -0.0 +0.5 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 -0.1 -0.2 +0.2 +0.2
complex community Community=guar; Passage=4 -0.4 +0.1 -0.2 +0.3 +0.5
complex community Community=Locust bean gum; Passage=4 -0.9 +0.4 +0.4 +0.4 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.1 +0.2 +0.2 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.2 +0.1 +0.2 +0.1
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