Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19180	PS417_19185	PS417_19190	PS417_19195	PS417_19200
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-0.0	-1.1	-1.4	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-0.1	-0.4	-1.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.0	-0.8	-0.8	-1.2
carbon source	D-Lactate (C)	-0.0	-0.0	-1.6	-0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.1	-0.9	-0.8	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.0	-0.8	-0.4	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+0.1	+0.0	-1.5	-0.8
phage	P. simiae Grant Run MOI 0.1	+0.0	+0.0	-2.0	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.0	-0.2	-0.2	-1.9
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.2	-0.0	-0.7	-0.6	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	+0.1	-0.4	-0.5	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.0	-0.8	+0.2	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	+0.3	+0.1	-1.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.1	-1.1	+0.3	-0.9
nitrogen source	Uridine (N)	+0.1	-0.1	-1.7	-0.2	+0.2
stress	Neomycin 0.04 mg/ml	-0.1	+0.0	-0.4	-1.7	+0.4
phage	P. simiae OR Antrim MOI 1	+0.1	+0.3	-1.8	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	-0.4	+0.4	-1.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	-0.1	-1.0	-0.6	+0.5
stress	methylglyoxal 0.032 vol%	+0.0	-0.2	-0.2	-1.9	+1.0
seeds	Growth on radish seeds for 72 hours	-0.1	-0.0	+0.7	-1.2	-0.4
phage	P. simiae OR Antrim MOI 0.1	+0.1	+0.2	-0.4	+0.5	-1.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	+0.0	+0.3	+0.5	-1.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.1	-0.7	+0.5	-0.7
seeds	Growth on radish seeds for 24 hours	+0.2	-0.1	-1.7	+1.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.3	+0.6	-0.8	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.1	+0.1	-0.8	+0.8	-0.5
soil	soil sample 4; outgrowth in LB	+0.1	+0.2	-0.8	+1.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	-0.4	+0.8	-0.9
phage	P. simiae ORA MOI 0.1	+0.1	-0.1	-0.6	+0.5	+0.9