Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19165 and PS417_19170 are separated by 36 nucleotidesPS417_19170 and PS417_19175 overlap by 4 nucleotidesPS417_19175 and PS417_19180 are separated by 57 nucleotidesPS417_19180 and PS417_19185 are separated by 125 nucleotides PS417_19165: PS417_19165 - insecticidal toxin complex protein, at 4,141,201 to 4,143,630 _19165 PS417_19170: PS417_19170 - insecticidal toxin complex protein TcaB1, at 4,143,667 to 4,148,541 _19170 PS417_19175: PS417_19175 - toxin, at 4,148,538 to 4,153,136 _19175 PS417_19180: PS417_19180 - sugar-binding protein, at 4,153,194 to 4,155,926 _19180 PS417_19185: PS417_19185 - toxin, at 4,156,052 to 4,159,045 _19185
Group Condition PS417_19165 PS417_19170 PS417_19175 PS417_19180 PS417_19185
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.0 -0.2 -0.2 -0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.0 -0.2 -0.1 -0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.2 -0.2 +0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.2 -0.2 -0.0 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.1 -0.1 +0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.1 -0.1 +0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.2 +0.0 +0.2 -0.1
carbon source L-Valine (C) +0.1 +0.1 +0.2 +0.3 -0.1
seeds Growth on radish seeds for 24 hours +0.3 +0.3 +0.0 +0.2 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 +0.2 +0.1 +0.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.2 +0.1 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +0.0 +0.1 +0.2 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 +0.1 +0.1 +0.2 +0.1
soil soil sample 7; outgrowth in LB +0.2 +0.1 +0.1 +0.0 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.2 +0.1 +0.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.0 +0.2 +0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +0.0 +0.2 +0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.1 +0.3 +0.2 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 +0.2 +0.2 +0.1 +0.3
root root sample 6; outgrowth in LB +0.0 +0.2 +0.1 +0.2 +0.3
seeds Growth on radish seeds for 72 hours +0.2 +0.2 +0.4 -0.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.2 +0.1 +0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +0.2 +0.1 +0.1 +0.3
seeds Growth on radish seeds for 72 hours +0.2 +0.4 +0.2 +0.2 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.2 +0.0 +0.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.2 +0.1 +0.0 +0.1
carbon source L-Valine (C) +0.2 +0.3 +0.0 +0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.0 +0.2 +0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.3 +0.2 +0.2 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.3 +0.1 +0.3 -0.0
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