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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3739 and GFF3740 overlap by 4 nucleotides
GFF3740 and GFF3741 are separated by 3 nucleotides
GFF3741 and GFF3742 are separated by 110 nucleotides
GFF3742 and GFF3743 are separated by 101 nucleotides
GFF3739 - Flagellar biosynthesis protein FliQ, at 3,781,556 to 3,781,828
GFF3739
GFF3740 - Flagellar biosynthesis protein FliR, at 3,781,825 to 3,782,607
GFF3740
GFF3741 - Flagellar biosynthesis protein FlhB, at 3,782,611 to 3,783,747
GFF3741
GFF3742 - hypothetical protein, at 3,783,858 to 3,784,337
GFF3742
GFF3743 - Flagellar cap protein FliD, at 3,784,439 to 3,785,851
GFF3743
Group
Condition
GFF3739
GFF3740
GFF3741
GFF3742
GFF3743
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.3
+0.2
-0.5
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
+0.0
+0.1
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.0
-0.0
+0.3
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.2
+0.2
+0.2
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.2
+0.1
+0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.1
+0.0
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.1
+0.2
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.2
-0.0
+0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.1
+0.2
+0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.4
+0.1
+0.2
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.2
+0.2
+0.3
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
+0.2
+0.3
+0.3
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.2
+0.2
+0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.3
+0.3
+0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.2
+0.2
+0.4
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.1
+0.2
+0.3
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
+0.2
+0.1
+0.4
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.7
+0.2
+0.0
+0.5
+0.1
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