Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19135	PS417_19140	PS417_19145	PS417_19150	PS417_19155
phage	JP1 MOI 10	-0.6	+0.1	-0.3	-0.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.2	-0.9	+0.3	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.0	+0.0	+0.6	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.1	-0.8	+0.1	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.2	-1.0	+0.7	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.2	-0.7	+0.4	-0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.3	-0.4	-0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.0	-0.6	+0.3	-0.4
solid stress	Fraxetin 3 mM; solid stress	+0.9	-0.4	+0.4	-0.4	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.3	+0.8	-0.7	+0.9
stress	Gentamicin 0.008 mg/ml	-0.4	+0.6	-0.2	+0.0	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.7	-0.2	-0.5	+0.4	-0.4
soil	soil sample 4; outgrowth in LB	-0.0	+0.5	+1.4	-0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.7	+0.2	+0.6	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.9	-0.3	+0.1	-0.4	+0.0
soil	soil sample 5; outgrowth in LB	+0.3	+0.4	+1.4	-0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.3	-0.4	+0.8	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.6	+0.1	+0.2	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.2	+0.8	+0.6	+0.8
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.2	+0.3	+1.7	-0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.3	+0.4	+0.3	-0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.7	+0.2	+0.5	+0.4	-0.7
soil	soil sample 7; outgrowth in LB	+0.8	+0.7	+0.9	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.0	+1.4	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.0	+1.5	+0.1	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.3	+0.7	+2.3	-0.2	-0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.0	+0.7	+1.8	-0.2	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.0	+1.8	+0.1	+0.6
root	root sample 6; outgrowth in LB	-0.3	+1.0	+1.8	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.1	+2.1	+0.6	+0.9