Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19090	PS417_19095	PS417_19100	PS417_19105	PS417_19110
carbon source	Carbon source D-Mannitol 2.5 mM	-0.8	-1.5	N.D.	-0.4	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.5	-3.1	N.D.	+0.4	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-3.0	N.D.	+0.1	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	-2.1	N.D.	+0.1	-0.3
stress	Nalidixic 0.015 mg/ml	-0.2	-1.8	N.D.	-0.0	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-1.6	N.D.	+0.0	-0.0
carbon source	Carbon source D-Mannitol 5 mM	-0.2	-1.7	N.D.	-0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.9	N.D.	-0.5	+0.4
phage	P. simiae Grant Run MOI 0.1	-0.0	-2.1	N.D.	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-2.0	N.D.	+0.2	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.9	N.D.	+0.2	-0.5
carbon source	Carbon source D-Mannitol 2.5 mM	-0.2	-1.6	N.D.	-0.1	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-2.1	N.D.	+0.2	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	-1.9	N.D.	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	-0.6	N.D.	+0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-2.2	N.D.	+0.1	+0.2
phage	JP1 MOI 1	+0.1	-1.6	N.D.	+0.1	+0.3
seeds	Growth on radish seeds for 72 hours	-0.4	-1.3	N.D.	+0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.4	N.D.	+0.4	+0.2
phage	P. simiae Grant Run MOI 10	+0.9	-1.6	N.D.	+0.1	-0.1
motility	inner cut, LB soft agar motility assay	+0.4	-1.4	N.D.	-0.0	+0.3
stress	methylglyoxal 0.032 vol%	+1.4	-2.0	N.D.	+0.1	+0.5
phage	JP1 MOI 1	+0.2	+1.6	N.D.	-0.4	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8	-0.5	N.D.	+0.2	+0.6
phage	P. simiae OR Antrim MOI 1	-0.5	+1.9	N.D.	-0.1	-0.0
nophagecontrol	Only library	-0.3	+1.7	N.D.	-0.1	-0.0
carbon source	L-Valine (C)	-0.5	+1.9	N.D.	+0.1	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.7	+1.2	N.D.	-0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+1.1	N.D.	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+2.0	N.D.	+0.0	-0.0