Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_19070	PS417_19075	PS417_19080	PS417_19085	PS417_19090
soil	soil sample 3; outgrowth in LB	-0.1	-0.8	N.D.	-0.8	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.8	N.D.	-0.2	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.3	N.D.	+0.1	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-1.0	N.D.	+0.4	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.8	N.D.	-0.3	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-1.0	N.D.	-0.5	-0.1
carbon source	Carbon source D-Mannitol 2.5 mM	+0.3	+0.1	N.D.	-0.8	-0.8
carbon source	Gly-Glu (C)	+0.1	-1.2	N.D.	+0.2	-0.3
phage	P. simiae ORA MOI 0.1	+0.5	+0.0	N.D.	-1.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-1.2	N.D.	-0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.9	N.D.	+0.6	-0.3
phage	JP1 MOI 10	+0.5	-0.5	N.D.	-1.0	+0.3
phage	Wcs_0.1	-0.4	+1.0	N.D.	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.5	N.D.	+0.8	-0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.7	N.D.	+0.6	-0.4
phage	P. simiae ORA MOI 10	+0.7	-0.5	N.D.	+0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.0	N.D.	+0.3	+0.5
soil	soil sample 5; outgrowth in LB	-0.6	+0.6	N.D.	-1.0	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+1.1	N.D.	-0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.7	N.D.	-0.1	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	+1.1	N.D.	+0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.5	N.D.	+1.1	+0.4
phage	Wcs_1	-0.4	+1.8	N.D.	+0.2	-0.2
phage	P. simiae OR1 MOI 0.1	+0.5	+1.4	N.D.	-0.5	+0.0
stress	Doxycycline hyclate 0.001 mg/ml	+0.0	+1.8	N.D.	-0.1	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+1.2	N.D.	-0.1	+0.5
stress	methylglyoxal 0.032 vol%	-0.3	+0.5	N.D.	+0.3	+1.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	+1.3	N.D.	+0.1	+0.8
stress	Neomycin 0.04 mg/ml	-0.1	+2.6	N.D.	+0.2	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	+1.7	N.D.	+0.8	+0.6