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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3722 and GFF3723 are separated by 16 nucleotides
GFF3723 and GFF3724 are separated by 84 nucleotides
GFF3724 and GFF3725 are separated by 219 nucleotides
GFF3725 and GFF3726 are separated by 312 nucleotides
GFF3722 - RNA polymerase sigma factor for flagellar operon, at 3,763,918 to 3,764,655
GFF3722
GFF3723 - Glucans biosynthesis glucosyltransferase H, at 3,764,672 to 3,766,534
GFF3723
GFF3724 - Glucans biosynthesis protein D precursor, at 3,766,619 to 3,768,100
GFF3724
GFF3725 - Flagellin protein FlaA, at 3,768,320 to 3,769,180
GFF3725
GFF3726 - Flagellar two-component response regulator FleR, at 3,769,493 to 3,770,770
GFF3726
Group
Condition
GFF3722
GFF3723
GFF3724
GFF3725
GFF3726
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.1
-0.3
+0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
-0.1
+0.0
+0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.1
-0.0
+0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.0
-0.0
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
-0.0
-0.2
+0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
+0.1
+0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.0
-0.1
+0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.0
-0.2
+0.3
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.1
-0.0
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.0
+0.0
+0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.2
+0.0
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.0
-0.1
+0.2
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.0
+0.2
+0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
-0.0
+0.1
+0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.1
+0.0
+0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.4
-0.2
+0.4
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.1
+0.2
+0.3
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
-0.3
+0.3
+0.3
+0.6
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