Fitness for 5 genes in Hydrogenophaga sp. GW460-11-11-14-LB1

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500 ntGFF3717 and GFF3718 are separated by 92 nucleotidesGFF3718 and GFF3719 are separated by 2 nucleotidesGFF3719 and GFF3720 are separated by 73 nucleotidesGFF3720 and GFF3721 overlap by 4 nucleotides GFF3717 - Salicylate hydroxylase (EC 1.14.13.1), at 610,335 to 611,474 GFF3717 GFF3718 - Transcriptional regulator, AraC family, at 611,567 to 612,556 GFF3718 GFF3719 - Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family, at 612,559 to 613,326 GFF3719 GFF3720 - Metal-dependent hydrolase, at 613,400 to 614,215 GFF3720 GFF3721 - Fumarylacetoacetate hydrolase family protein, at 614,212 to 615,198 GFF3721
Group Condition GFF3717 GFF3718 GFF3719 GFF3720 GFF3721
carbon source Ying_all64 rep A; time point 1 N.D. N.D. -0.1 -1.7 -0.1
carbon source Ying_Others16 rep A; time point 3 N.D. N.D. -0.3 -1.2 -0.2
carbon source Ying_Others16 rep B; time point 2 N.D. N.D. -0.2 -1.2 +0.1
carbon source Ying_AminoAcid20 rep A; time point 3 N.D. N.D. -0.5 -0.0 -0.7
carbon source Ying_sugar7 rep C; time point 2 N.D. N.D. -0.6 -0.6 -0.0
carbon source Ying_sugar7 rep B; time point 2 N.D. N.D. -0.4 -0.5 -0.2
carbon source Ying_Nucleobase14 rep A; time point 2 N.D. N.D. -0.9 +0.0 -0.1
carbon source Ying_AminoAcid20 rep B; time point 3 N.D. N.D. -0.5 -0.5 -0.1
carbon source Ying_Nucleobase14 rep C; time point 2 N.D. N.D. -0.6 -0.4 +0.1
carbon source Ying_sugar7 rep A; time point 3 N.D. N.D. -0.5 -0.4 +0.1
carbon source Ying_AminoAcid20 rep C; time point 2 N.D. N.D. -0.3 -0.5 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 3 N.D. N.D. -0.6 +0.2 -0.4
carbon source Ying_Others16 rep B; time point 3 N.D. N.D. -0.7 -0.4 +0.3
carbon source Ying_sugar7 rep A; time point 2 N.D. N.D. -0.5 -0.3 +0.1
carbon source Ying_all64 rep A; time point 2 N.D. N.D. -0.4 -0.7 +0.4
carbon source Ying_OrganicAcid7 rep B; time point 1 N.D. N.D. -0.3 -0.4 +0.1
carbon source Ying_Nucleobase14 rep A; time point 1 N.D. N.D. -0.4 -0.4 +0.2
carbon source Ying_Nucleobase14 rep B; time point 2 N.D. N.D. -0.8 +0.1 +0.2
carbon source Ying_sugar7 rep C; time point 3 N.D. N.D. -0.4 +0.6 -0.7
carbon source Ying_all64 rep B; time point 2 N.D. N.D. -0.4 +0.2 -0.2
carbon source Ying_sugar7 rep B; time point 1 N.D. N.D. -0.4 -0.1 +0.2
carbon source Ying_OrganicAcid7 rep C; time point 2 N.D. N.D. -0.3 -0.2 +0.2
carbon source Ying_AminoAcid20 rep C; time point 3 N.D. N.D. -0.4 -0.1 +0.3
carbon source Ying_all64 rep B; time point 3 N.D. N.D. -0.5 +0.1 +0.2
carbon source Ying_AminoAcid20 rep A; time point 2 N.D. N.D. -0.6 +0.2 +0.3
carbon source Ying_AminoAcid20 rep C; time point 1 N.D. N.D. -0.5 -0.0 +0.4
carbon source Ying_AminoAcid20 rep B; time point 2 N.D. N.D. -0.5 +0.2 +0.2
carbon source Ying_all64 rep C; time point 2 N.D. N.D. -0.4 +0.1 +0.3
carbon source Ying_OrganicAcid7 rep C; time point 3 N.D. N.D. -0.6 +0.4 +0.4
carbon source Ying_all64 rep C; time point 3 N.D. N.D. -0.4 +0.9 +0.4
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