Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_19020 and PS417_19025 overlap by 4 nucleotidesPS417_19025 and PS417_19030 are separated by 95 nucleotidesPS417_19030 and PS417_19035 are separated by 52 nucleotidesPS417_19035 and PS417_19040 are separated by 115 nucleotides PS417_19020: PS417_19020 - dimethylmenaquinone methyltransferase, at 4,116,184 to 4,116,849 _19020 PS417_19025: PS417_19025 - aspartate aminotransferase, at 4,116,846 to 4,118,051 _19025 PS417_19030: PS417_19030 - sodium:dicarboxylate symporter, at 4,118,147 to 4,119,424 _19030 PS417_19035: PS417_19035 - heat-shock protein, at 4,119,477 to 4,119,935 _19035 PS417_19040: PS417_19040 - aspartate racemase, at 4,120,051 to 4,121,502 _19040
Group Condition PS417_19020 PS417_19025 PS417_19030 PS417_19035 PS417_19040
phage Wcs_1 -0.6 -0.1 -0.9 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +0.2 -0.4 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 -0.3 +0.2 N.D. +0.4
phage P. simiae OR Antrim MOI 1 +0.6 -0.1 -0.6 N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -0.1 +0.4 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.3 -1.1 N.D. +0.3
root root sample 6; outgrowth in LB -0.9 -0.2 +0.7 N.D. +0.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.5 -0.3 +0.4 N.D. -0.5
phage P. simiae OR Antrim MOI 1 +0.9 +0.2 +0.0 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 -0.1 -0.4 N.D. +0.1
liquid stress Scopoletin 3 mM; liquid stress +0.3 -0.3 +0.9 N.D. -0.0
liquid stress 80% Methanol 3 mM; liquid stress +0.6 -0.2 +0.7 N.D. -0.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 -0.1 +1.1 N.D. -0.2
liquid stress 80% Methanol 2 mM; liquid stress +0.4 -0.1 +1.1 N.D. -0.1
liquid stress Fraxetin 2 mM; liquid stress +0.6 -0.1 +0.9 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.3 +0.7 N.D. -0.3
liquid stress Fraxetin 2 mM; liquid stress +0.9 -0.3 +1.2 N.D. -0.3
liquid stress Fraxetin 2 mM; liquid stress +0.6 -0.1 +0.9 N.D. -0.0
liquid stress 80% Methanol 3 mM; liquid stress +0.9 -0.2 +1.0 N.D. -0.2
liquid stress Fraxetin 3 mM; liquid stress +0.7 -0.2 +1.1 N.D. -0.1
liquid stress Fraxetin 2 mM; liquid stress +0.7 +0.0 +0.9 N.D. -0.1
liquid stress Scopoletin 2 mM; liquid stress +0.6 +0.0 +0.9 N.D. +0.0
liquid stress 80% Methanol 2 mM; liquid stress +0.7 -0.0 +1.0 N.D. -0.0
liquid stress 80% Methanol 2 mM; liquid stress +0.8 -0.1 +1.1 N.D. -0.1
liquid stress 80% Methanol 3 mM; liquid stress +1.0 +0.1 +0.8 N.D. +0.1
phage JP1 MOI 10 +1.3 +0.0 +0.4 N.D. +0.1
liquid stress Scopoletin 2 mM; liquid stress +0.8 -0.2 +1.3 N.D. +0.0
liquid stress Fraxetin 2 mM; liquid stress +1.2 -0.1 +1.1 N.D. -0.2
liquid stress 80% Methanol 2 mM; liquid stress +0.9 +0.0 +1.1 N.D. +0.2
liquid stress 80% Methanol 3 mM; liquid stress +1.6 -0.2 +0.8 N.D. +0.1
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