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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3703 and GFF3704 are separated by 45 nucleotides
GFF3704 and GFF3705 are separated by 22 nucleotides
GFF3705 and GFF3706 overlap by 4 nucleotides
GFF3706 and GFF3707 overlap by 4 nucleotides
GFF3703 - LemA family protein, at 203,660 to 204,259
GFF3703
GFF3704 - FIG00536957: hypothetical protein, at 204,305 to 205,063
GFF3704
GFF3705 - Amidases related to nicotinamidase, at 205,086 to 205,760
GFF3705
GFF3706 - ABC transporter, permease protein 2 (cluster 11, riboflavin/purine nucleoside/unknown), at 205,757 to 206,689
GFF3706
GFF3707 - ABC transporter, permease protein 1 (cluster 11, riboflavin/purine nucleoside/unknown), at 206,686 to 207,807
GFF3707
Group
Condition
GFF3703
GFF3704
GFF3705
GFF3706
GFF3707
complex community
Community=Locust bean gum; Passage=4
-0.8
-4.5
-0.1
+0.1
+0.3
complex community
Community=Locust bean gum; Passage=4
-1.3
-0.3
-2.8
-0.1
+0.8
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.5
-2.2
-0.2
-0.2
complex community
Community=guar; Passage=4
-0.3
+0.2
-2.9
-0.1
+0.0
complex community
Community=guar; Passage=4
+0.3
-0.1
-3.0
+0.2
-0.1
complex community
Community=guar; Passage=4
-0.4
+0.4
-2.0
-0.1
+0.0
complex community
Community=Locust bean gum; Passage=4
+0.4
-2.1
-1.2
+0.6
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
+0.0
-1.8
-0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.4
+0.0
-1.0
+0.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.2
-1.5
-0.3
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.2
-0.9
-0.6
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.3
-0.3
-0.4
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.3
-0.5
-0.5
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.1
-1.0
-0.1
+0.0
complex community
Community=guar; Passage=4
-0.6
-0.4
+1.0
-0.7
-0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.3
+0.1
-0.4
-0.5
+0.2
complex community
Community=arabino-guar; Passage=4
+0.0
-0.4
-0.6
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.5
+0.3
-0.4
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.1
-0.3
-0.7
+0.1
phage
phage_bap4
+0.3
-0.3
-0.6
-0.3
+0.3
complex community
Community=arabino-guar; Passage=4
-0.1
+0.7
-1.7
+0.7
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.4
-0.5
-0.3
+0.0
phage
phage_bap4
-0.0
+0.6
-0.7
-0.1
-0.1
complex community
Community=arabino-guar; Passage=4
-0.2
+1.3
-1.1
+0.1
-0.2
phage
phage_bap4
-0.1
+0.6
-0.7
+0.2
+0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.3
+0.3
+0.4
-0.5
-0.2
complex community
Community=arabino-guar; Passage=4
-0.1
-0.6
+0.4
+0.1
+0.6
complex community
Community=Kojac gum; Passage=4
+0.5
+0.9
-0.4
-0.2
+0.1
no phage control
no phage control
+0.2
+0.6
+0.7
-0.4
+0.0
phage
phage_bap4
+0.4
+0.7
+0.3
-0.1
-0.0
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