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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3698 and GFF3699 are separated by 139 nucleotides
GFF3699 and GFF3700 overlap by 4 nucleotides
GFF3700 and GFF3701 are separated by 162 nucleotides
GFF3701 and GFF3702 are separated by 348 nucleotides
GFF3698 - hypothetical protein, at 3,742,807 to 3,743,478
GFF3698
GFF3699 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 3,743,618 to 3,744,337
GFF3699
GFF3700 - Two-component system sensor histidine kinase, at 3,744,334 to 3,745,707
GFF3700
GFF3701 - L-Proline/Glycine betaine transporter ProP, at 3,745,870 to 3,747,417
GFF3701
GFF3702 - Flagellar motor rotation protein MotB, at 3,747,766 to 3,748,821
GFF3702
Group
Condition
GFF3698
GFF3699
GFF3700
GFF3701
GFF3702
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.4
-0.2
-0.9
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.1
-0.5
-0.4
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.3
+0.0
-0.5
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
-0.1
-0.1
-0.4
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
-0.1
-0.1
-0.5
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.2
-0.0
-0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.1
-0.1
-0.3
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.0
-0.3
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.1
+0.0
-0.3
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.3
-0.0
-0.9
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.1
-0.1
-0.2
+0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.0
-0.1
-0.3
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.1
+0.1
-0.3
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
+0.1
-0.1
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.0
-0.1
-0.0
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.0
-0.1
-0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.2
-0.0
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.0
-0.1
-0.0
+0.3
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