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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3691 and GFF3692 are separated by 46 nucleotides
GFF3692 and GFF3693 are separated by 1 nucleotides
GFF3693 and GFF3694 are separated by 25 nucleotides
GFF3694 and GFF3695 are separated by 81 nucleotides
GFF3691 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 190,650 to 191,684
GFF3691
GFF3692 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 191,731 to 192,693
GFF3692
GFF3693 - Oxidoreductase, at 192,695 to 193,858
GFF3693
GFF3694 - Phosphoesterase, PA-phosphatase related, at 193,884 to 194,597
GFF3694
GFF3695 - hypothetical protein, at 194,679 to 195,197
GFF3695
Group
Condition
GFF3691
GFF3692
GFF3693
GFF3694
GFF3695
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.5
-0.0
-1.0
+0.1
complex community
Community=arabino-guar; Passage=4
-0.0
-0.7
+0.2
-0.6
-0.3
complex community
Community=guar; Passage=4
-0.1
-0.4
+0.3
-0.9
-0.4
complex community
Community=guar; Passage=4
+0.1
-0.3
+0.5
-1.1
-0.3
phage
phage_bap4
+0.0
-0.2
-0.3
+0.0
-0.3
complex community
Community=guar; Passage=4
-0.5
-0.1
+0.1
+0.2
-0.5
complex community
Community=guar; Passage=4
-0.2
-0.5
+0.3
-0.3
+0.1
complex community
Community=Kojac gum; Passage=4
-0.0
+0.2
+0.2
+0.1
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.3
-0.2
-0.1
-0.2
phage
phage_bap4
-0.1
-0.1
-0.2
-0.2
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.3
-0.2
+0.6
-0.1
-0.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.4
+0.1
-0.1
-0.3
complex community
Community=arabino-guar; Passage=4
-0.0
-0.3
-0.5
-0.2
+1.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.3
+0.2
-0.2
-0.1
phage
phage_bap4
+0.0
+0.2
-0.2
-0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.1
+0.3
-0.3
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.1
+0.2
-0.7
+1.0
complex community
Community=arabino-guar; Passage=4
-0.1
-0.2
+0.2
-0.5
+0.9
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.2
+0.2
-0.3
+0.5
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.3
+0.1
-0.3
+0.4
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
+0.3
-0.1
-0.2
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.2
+0.1
-0.1
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.3
+0.2
+0.2
-0.1
complex community
Community=Locust bean gum; Passage=1
+0.0
-0.0
+0.4
-0.1
+0.4
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.2
+0.4
+0.1
-0.3
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.0
-0.1
+0.4
-0.0
+0.4
complex community
Community=arabino-guar; Passage=4
-0.1
+0.6
+0.0
-0.2
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.1
-0.1
+0.2
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.1
+0.0
+0.2
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.4
-0.0
+0.5
+0.2
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