Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_18875	PS417_18880	PS417_18885	PS417_18890	PS417_18895
phage	JP1 MOI 0.1	N.D.	+0.0	-2.4	-0.0	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.2	-1.2	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-1.5	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	-1.5	-0.0	+0.1
phage	P. simiae OR Antrim MOI 1	N.D.	-0.1	-1.2	+0.0	-0.4
nophagecontrol	Only library	N.D.	-0.2	-1.5	-0.1	+0.2
motility	inner cut, LB soft agar motility assay	N.D.	-0.5	-0.8	+0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-1.9	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-1.1	+0.2	-0.2
motility	inner cut, LB soft agar motility assay	N.D.	-0.2	-1.4	+0.0	+0.2
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	N.D.	-0.1	-1.1	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-1.0	-0.2	+0.3
motility	outer cut, LB soft agar motility assay	N.D.	-0.1	-1.3	+0.1	+0.1
carbon source	octanoate (C)	N.D.	+0.2	-1.2	-0.0	-0.1
carbon source	L-Valine (C)	N.D.	+0.2	-1.2	+0.2	-0.2
stress	Gentamicin 0.008 mg/ml	N.D.	+0.3	-1.4	-0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.6	-0.7	+0.4	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-1.2	+0.2	+0.2
seeds	Growth on radish seeds for 72 hours	N.D.	-0.2	-0.2	-0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.7	+0.5	+0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	-0.4	+0.9	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.1	+0.7	+0.3	-0.4
stress	Choline chloride 300 mM	N.D.	+0.3	+0.9	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.2	+1.1	+0.1	-0.2
carbon source	2-Deoxy-D-Ribose 10 mM (C)	N.D.	-0.3	+1.3	+0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.1	+1.5	-0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	+0.7	+0.8	-0.0
carbon source	D-Mannose (C)	N.D.	+0.3	+1.2	+0.1	+0.1
carbon source	D-Mannose (C)	N.D.	+0.2	+1.8	+0.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.7	+1.4	+0.1	+0.0