Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01870	PS417_01875	PS417_01880	PS417_01885	PS417_01890
carbon source	Gly-Glu (C)	N.D.	-0.9	-0.4	-1.5	-0.5
soil	soil sample 2; outgrowth in LB	N.D.	-1.4	+0.2	-0.6	-0.5
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-1.0	+0.1	-0.6	-0.2
carbon source	Gly-Glu (C)	N.D.	+0.1	-0.6	-0.6	-0.4
soil	soil sample 7; outgrowth in LB	N.D.	+0.2	-0.6	-0.9	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.1	-0.3	+0.2	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-1.1	-0.3	+0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.0	+0.2	-0.5	+0.5
carbon source	L-Valine (C)	N.D.	+1.1	-0.5	-0.6	-0.8
supernatant control	Vogels_fungal_media 0.1X	N.D.	-1.2	-0.0	+0.3	+0.3
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	+1.3	-0.7	-0.5	-0.5
stress	Cisplatin 0.01 mg/ml	N.D.	-0.9	-0.1	+0.5	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.8	+0.7	+0.3	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-0.6	+0.1	+0.6	+0.4
phage	JP1 MOI 1	N.D.	+1.2	-0.3	-0.3	+0.0
phage	P. simiae OR Antrim MOI 10	N.D.	+0.6	+0.4	-0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.8	+0.1	-0.6	+0.7
phage	JP1 MOI 10	N.D.	+0.6	-0.3	+0.7	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.1	-0.4	+0.6	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	+0.3	+1.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+1.3	-0.4	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.0	+2.2	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.1	+0.4	+1.2	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	+0.3	+1.1	+0.2
seeds	Growth on radish seeds for 72 hours	N.D.	+0.5	+0.3	+1.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.1	+0.1	+0.6	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.8	+0.4	+0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+1.3	+0.2	+0.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+2.1	+0.4	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.1	+0.5	+0.6	+0.9